Protein–RNA interactions for Protein: Q9UPQ7

PDZRN3, E3 ubiquitin-protein ligase PDZRN3, humanhuman

Predictions only

Length 1,066 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3Q9UPQ7 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
PDZRN3Q9UPQ7 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
PDZRN3Q9UPQ7 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC31.25■■■□□ 2.59
PDZRN3Q9UPQ7 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC31.25■■■□□ 2.59
PDZRN3Q9UPQ7 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC31.25■■■□□ 2.59
PDZRN3Q9UPQ7 AC010980.1-201ENST00000587192 1142 ntBASIC31.25■■■□□ 2.59
PDZRN3Q9UPQ7 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
PDZRN3Q9UPQ7 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC31.25■■■□□ 2.59
PDZRN3Q9UPQ7 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC31.24■■■□□ 2.59
PDZRN3Q9UPQ7 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC31.24■■■□□ 2.59
PDZRN3Q9UPQ7 PFN2-211ENST00000489155 636 ntTSL 4 BASIC31.24■■■□□ 2.59
PDZRN3Q9UPQ7 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC31.24■■■□□ 2.59
PDZRN3Q9UPQ7 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC31.24■■■□□ 2.59
PDZRN3Q9UPQ7 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC31.23■■■□□ 2.59
PDZRN3Q9UPQ7 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC31.23■■■□□ 2.59
PDZRN3Q9UPQ7 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC31.23■■■□□ 2.59
PDZRN3Q9UPQ7 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
PDZRN3Q9UPQ7 AC009299.2-201ENST00000482477 511 ntBASIC31.22■■■□□ 2.59
PDZRN3Q9UPQ7 HYI-210ENST00000486909 905 ntTSL 5 BASIC31.22■■■□□ 2.59
PDZRN3Q9UPQ7 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
PDZRN3Q9UPQ7 MIR3960-201ENST00000583311 91 ntBASIC31.22■■■□□ 2.59
PDZRN3Q9UPQ7 MIR6765-201ENST00000614092 87 ntBASIC31.22■■■□□ 2.59
PDZRN3Q9UPQ7 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
PDZRN3Q9UPQ7 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC31.22■■■□□ 2.59
PDZRN3Q9UPQ7 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
PDZRN3Q9UPQ7 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC31.21■■■□□ 2.59
PDZRN3Q9UPQ7 YBX1P4-201ENST00000392794 808 ntBASIC31.21■■■□□ 2.59
PDZRN3Q9UPQ7 AC139795.1-202ENST00000500444 432 ntBASIC31.21■■■□□ 2.59
PDZRN3Q9UPQ7 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC31.21■■■□□ 2.59
PDZRN3Q9UPQ7 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
PDZRN3Q9UPQ7 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC31.2■■■□□ 2.59
PDZRN3Q9UPQ7 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC31.2■■■□□ 2.59
PDZRN3Q9UPQ7 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC31.2■■■□□ 2.59
PDZRN3Q9UPQ7 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC31.2■■■□□ 2.58
PDZRN3Q9UPQ7 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
PDZRN3Q9UPQ7 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC31.19■■■□□ 2.58
PDZRN3Q9UPQ7 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC31.19■■■□□ 2.58
PDZRN3Q9UPQ7 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC31.19■■■□□ 2.58
PDZRN3Q9UPQ7 HES6-204ENST00000409182 863 ntTSL 2 BASIC31.19■■■□□ 2.58
PDZRN3Q9UPQ7 SPCS2P3-201ENST00000500401 656 ntBASIC31.19■■■□□ 2.58
PDZRN3Q9UPQ7 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
PDZRN3Q9UPQ7 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
PDZRN3Q9UPQ7 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC31.19■■■□□ 2.58
PDZRN3Q9UPQ7 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC31.18■■■□□ 2.58
PDZRN3Q9UPQ7 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC31.18■■■□□ 2.58
PDZRN3Q9UPQ7 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
PDZRN3Q9UPQ7 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC31.17■■■□□ 2.58
PDZRN3Q9UPQ7 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC31.17■■■□□ 2.58
PDZRN3Q9UPQ7 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
PDZRN3Q9UPQ7 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC31.17■■■□□ 2.58
PDZRN3Q9UPQ7 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC31.17■■■□□ 2.58
PDZRN3Q9UPQ7 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC31.16■■■□□ 2.58
PDZRN3Q9UPQ7 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC31.16■■■□□ 2.58
PDZRN3Q9UPQ7 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC31.16■■■□□ 2.58
PDZRN3Q9UPQ7 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC31.16■■■□□ 2.58
PDZRN3Q9UPQ7 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC31.16■■■□□ 2.58
PDZRN3Q9UPQ7 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
PDZRN3Q9UPQ7 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC31.15■■■□□ 2.58
PDZRN3Q9UPQ7 AC019069.1-201ENST00000610008 1333 ntBASIC31.15■■■□□ 2.58
PDZRN3Q9UPQ7 KRT8P33-201ENST00000508125 1423 ntBASIC31.15■■■□□ 2.58
PDZRN3Q9UPQ7 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC31.14■■■□□ 2.58
PDZRN3Q9UPQ7 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
PDZRN3Q9UPQ7 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC31.14■■■□□ 2.58
PDZRN3Q9UPQ7 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC31.14■■■□□ 2.58
PDZRN3Q9UPQ7 AC103834.1-201ENST00000520383 144 ntBASIC31.14■■■□□ 2.58
PDZRN3Q9UPQ7 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC31.14■■■□□ 2.57
PDZRN3Q9UPQ7 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC31.13■■■□□ 2.57
PDZRN3Q9UPQ7 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
PDZRN3Q9UPQ7 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC31.13■■■□□ 2.57
PDZRN3Q9UPQ7 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
PDZRN3Q9UPQ7 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC31.13■■■□□ 2.57
PDZRN3Q9UPQ7 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
PDZRN3Q9UPQ7 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC31.13■■■□□ 2.57
PDZRN3Q9UPQ7 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC31.13■■■□□ 2.57
PDZRN3Q9UPQ7 BEX3-202ENST00000372634 753 ntTSL 2 BASIC31.12■■■□□ 2.57
PDZRN3Q9UPQ7 MIR4508-201ENST00000584178 70 ntBASIC31.12■■■□□ 2.57
PDZRN3Q9UPQ7 AC018755.3-202ENST00000596210 929 ntBASIC31.12■■■□□ 2.57
PDZRN3Q9UPQ7 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
PDZRN3Q9UPQ7 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
PDZRN3Q9UPQ7 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
PDZRN3Q9UPQ7 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
PDZRN3Q9UPQ7 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC31.12■■■□□ 2.57
PDZRN3Q9UPQ7 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
PDZRN3Q9UPQ7 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC31.11■■■□□ 2.57
PDZRN3Q9UPQ7 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
PDZRN3Q9UPQ7 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC31.09■■■□□ 2.57
PDZRN3Q9UPQ7 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
PDZRN3Q9UPQ7 AL449106.1-201ENST00000608517 1980 ntBASIC31.09■■■□□ 2.57
PDZRN3Q9UPQ7 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
PDZRN3Q9UPQ7 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC31.09■■■□□ 2.57
PDZRN3Q9UPQ7 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC31.09■■■□□ 2.57
PDZRN3Q9UPQ7 AC091060.1-201ENST00000623524 1766 ntBASIC31.09■■■□□ 2.57
PDZRN3Q9UPQ7 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC31.08■■■□□ 2.57
PDZRN3Q9UPQ7 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
PDZRN3Q9UPQ7 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
PDZRN3Q9UPQ7 GUSBP5-201ENST00000418136 578 ntBASIC31.08■■■□□ 2.57
PDZRN3Q9UPQ7 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
PDZRN3Q9UPQ7 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
PDZRN3Q9UPQ7 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
PDZRN3Q9UPQ7 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms