Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.16■□□□□ 0.82
CSPG4Q6UVK1 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.16■□□□□ 0.82
CSPG4Q6UVK1 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
CSPG4Q6UVK1 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSPG4Q6UVK1 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CSPG4Q6UVK1 LONRF2P2-201ENST00000439212 571 ntBASIC20.15■□□□□ 0.82
CSPG4Q6UVK1 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CSPG4Q6UVK1 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.15■□□□□ 0.82
CSPG4Q6UVK1 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.15■□□□□ 0.82
CSPG4Q6UVK1 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.15■□□□□ 0.82
CSPG4Q6UVK1 AL359504.2-201ENST00000605506 1601 ntBASIC20.15■□□□□ 0.82
CSPG4Q6UVK1 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CSPG4Q6UVK1 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CSPG4Q6UVK1 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.15■□□□□ 0.82
CSPG4Q6UVK1 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CSPG4Q6UVK1 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC20.14■□□□□ 0.82
CSPG4Q6UVK1 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC20.14■□□□□ 0.82
CSPG4Q6UVK1 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.14■□□□□ 0.82
CSPG4Q6UVK1 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
CSPG4Q6UVK1 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
CSPG4Q6UVK1 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CSPG4Q6UVK1 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CSPG4Q6UVK1 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.14■□□□□ 0.81
CSPG4Q6UVK1 KRT16P3-201ENST00000439127 1283 ntBASIC20.14■□□□□ 0.81
CSPG4Q6UVK1 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.14■□□□□ 0.81
CSPG4Q6UVK1 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.13■□□□□ 0.81
CSPG4Q6UVK1 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
CSPG4Q6UVK1 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.13■□□□□ 0.81
CSPG4Q6UVK1 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CSPG4Q6UVK1 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CSPG4Q6UVK1 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CSPG4Q6UVK1 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CSPG4Q6UVK1 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
CSPG4Q6UVK1 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
CSPG4Q6UVK1 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
CSPG4Q6UVK1 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CSPG4Q6UVK1 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
CSPG4Q6UVK1 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CSPG4Q6UVK1 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CSPG4Q6UVK1 AL139246.5-201ENST00000606645 996 ntBASIC20.12■□□□□ 0.81
CSPG4Q6UVK1 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC20.12■□□□□ 0.81
CSPG4Q6UVK1 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CSPG4Q6UVK1 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CSPG4Q6UVK1 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CSPG4Q6UVK1 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CSPG4Q6UVK1 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CSPG4Q6UVK1 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.11■□□□□ 0.81
CSPG4Q6UVK1 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CSPG4Q6UVK1 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CSPG4Q6UVK1 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CSPG4Q6UVK1 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.1■□□□□ 0.81
CSPG4Q6UVK1 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CSPG4Q6UVK1 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.1■□□□□ 0.81
CSPG4Q6UVK1 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
CSPG4Q6UVK1 WHAMMP3-201ENST00000611636 1609 ntBASIC20.1■□□□□ 0.81
CSPG4Q6UVK1 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC20.1■□□□□ 0.81
CSPG4Q6UVK1 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CSPG4Q6UVK1 AC005837.3-201ENST00000612163 286 ntBASIC20.1■□□□□ 0.81
CSPG4Q6UVK1 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CSPG4Q6UVK1 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CSPG4Q6UVK1 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.1■□□□□ 0.81
CSPG4Q6UVK1 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CSPG4Q6UVK1 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CSPG4Q6UVK1 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CSPG4Q6UVK1 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CSPG4Q6UVK1 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
CSPG4Q6UVK1 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CSPG4Q6UVK1 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.08■□□□□ 0.81
CSPG4Q6UVK1 MIR3621-201ENST00000580529 85 ntBASIC20.08■□□□□ 0.81
CSPG4Q6UVK1 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CSPG4Q6UVK1 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CSPG4Q6UVK1 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
CSPG4Q6UVK1 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CSPG4Q6UVK1 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.07■□□□□ 0.8
CSPG4Q6UVK1 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CSPG4Q6UVK1 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
CSPG4Q6UVK1 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CSPG4Q6UVK1 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC20.07■□□□□ 0.8
CSPG4Q6UVK1 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CSPG4Q6UVK1 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
CSPG4Q6UVK1 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CSPG4Q6UVK1 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CSPG4Q6UVK1 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CSPG4Q6UVK1 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CSPG4Q6UVK1 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
CSPG4Q6UVK1 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CSPG4Q6UVK1 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CSPG4Q6UVK1 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC20.05■□□□□ 0.8
CSPG4Q6UVK1 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CSPG4Q6UVK1 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CSPG4Q6UVK1 KRT18P24-201ENST00000344739 1156 ntBASIC20.04■□□□□ 0.8
CSPG4Q6UVK1 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CSPG4Q6UVK1 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC20.04■□□□□ 0.8
CSPG4Q6UVK1 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
CSPG4Q6UVK1 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CSPG4Q6UVK1 AC137630.3-201ENST00000607245 391 ntBASIC20.04■□□□□ 0.8
CSPG4Q6UVK1 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CSPG4Q6UVK1 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC20.04■□□□□ 0.8
CSPG4Q6UVK1 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.03■□□□□ 0.8
CSPG4Q6UVK1 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms