Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC28.1■■■□□ 2.09
CCDC144BQ3MJ40 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
CCDC144BQ3MJ40 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC28.1■■■□□ 2.09
CCDC144BQ3MJ40 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
CCDC144BQ3MJ40 SPCS2P3-201ENST00000500401 656 ntBASIC28.09■■■□□ 2.09
CCDC144BQ3MJ40 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
CCDC144BQ3MJ40 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CCDC144BQ3MJ40 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC28.08■■■□□ 2.09
CCDC144BQ3MJ40 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CCDC144BQ3MJ40 PFN2-211ENST00000489155 636 ntTSL 4 BASIC28.08■■■□□ 2.09
CCDC144BQ3MJ40 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC28.08■■■□□ 2.09
CCDC144BQ3MJ40 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
CCDC144BQ3MJ40 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC28.08■■■□□ 2.09
CCDC144BQ3MJ40 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CCDC144BQ3MJ40 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CCDC144BQ3MJ40 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC28.07■■■□□ 2.08
CCDC144BQ3MJ40 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC28.07■■■□□ 2.08
CCDC144BQ3MJ40 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
CCDC144BQ3MJ40 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC28.07■■■□□ 2.08
CCDC144BQ3MJ40 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC28.07■■■□□ 2.08
CCDC144BQ3MJ40 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC28.06■■■□□ 2.08
CCDC144BQ3MJ40 MIR3960-201ENST00000583311 91 ntBASIC28.06■■■□□ 2.08
CCDC144BQ3MJ40 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
CCDC144BQ3MJ40 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC28.06■■■□□ 2.08
CCDC144BQ3MJ40 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
CCDC144BQ3MJ40 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
CCDC144BQ3MJ40 PKM-204ENST00000449901 2526 ntTSL 2 BASIC28.05■■■□□ 2.08
CCDC144BQ3MJ40 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC28.05■■■□□ 2.08
CCDC144BQ3MJ40 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC28.04■■■□□ 2.08
CCDC144BQ3MJ40 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC28.04■■■□□ 2.08
CCDC144BQ3MJ40 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
CCDC144BQ3MJ40 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
CCDC144BQ3MJ40 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC28.04■■■□□ 2.08
CCDC144BQ3MJ40 BHLHE23-202ENST00000612929 1109 ntBASIC28.04■■■□□ 2.08
CCDC144BQ3MJ40 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
CCDC144BQ3MJ40 AL451085.2-201ENST00000605085 799 ntBASIC28.03■■■□□ 2.08
CCDC144BQ3MJ40 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC28.03■■■□□ 2.08
CCDC144BQ3MJ40 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC28.02■■■□□ 2.08
CCDC144BQ3MJ40 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC28.02■■■□□ 2.08
CCDC144BQ3MJ40 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC28.02■■■□□ 2.08
CCDC144BQ3MJ40 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC28.02■■■□□ 2.08
CCDC144BQ3MJ40 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC28.02■■■□□ 2.08
CCDC144BQ3MJ40 AL035685.1-201ENST00000636663 812 ntBASIC28.02■■■□□ 2.08
CCDC144BQ3MJ40 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC28.02■■■□□ 2.08
CCDC144BQ3MJ40 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC28.02■■■□□ 2.08
CCDC144BQ3MJ40 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
CCDC144BQ3MJ40 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC28.02■■■□□ 2.08
CCDC144BQ3MJ40 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC28.01■■■□□ 2.07
CCDC144BQ3MJ40 AC010980.1-201ENST00000587192 1142 ntBASIC28.01■■■□□ 2.07
CCDC144BQ3MJ40 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
CCDC144BQ3MJ40 AC091060.1-201ENST00000623524 1766 ntBASIC28.01■■■□□ 2.07
CCDC144BQ3MJ40 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC28.01■■■□□ 2.07
CCDC144BQ3MJ40 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC28■■■□□ 2.07
CCDC144BQ3MJ40 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC27.99■■■□□ 2.07
CCDC144BQ3MJ40 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
CCDC144BQ3MJ40 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC27.99■■■□□ 2.07
CCDC144BQ3MJ40 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC27.99■■■□□ 2.07
CCDC144BQ3MJ40 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
CCDC144BQ3MJ40 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC27.99■■■□□ 2.07
CCDC144BQ3MJ40 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
CCDC144BQ3MJ40 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC27.98■■■□□ 2.07
CCDC144BQ3MJ40 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
CCDC144BQ3MJ40 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
CCDC144BQ3MJ40 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
CCDC144BQ3MJ40 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
CCDC144BQ3MJ40 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC27.97■■■□□ 2.07
CCDC144BQ3MJ40 MIR6765-201ENST00000614092 87 ntBASIC27.97■■■□□ 2.07
CCDC144BQ3MJ40 AC074183.2-201ENST00000623112 922 ntBASIC27.97■■■□□ 2.07
CCDC144BQ3MJ40 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC27.96■■■□□ 2.07
CCDC144BQ3MJ40 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC27.96■■■□□ 2.07
CCDC144BQ3MJ40 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
CCDC144BQ3MJ40 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC27.96■■■□□ 2.07
CCDC144BQ3MJ40 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC27.96■■■□□ 2.07
CCDC144BQ3MJ40 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
CCDC144BQ3MJ40 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.07
CCDC144BQ3MJ40 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.07
CCDC144BQ3MJ40 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC27.95■■■□□ 2.06
CCDC144BQ3MJ40 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
CCDC144BQ3MJ40 KRT8P33-201ENST00000508125 1423 ntBASIC27.94■■■□□ 2.06
CCDC144BQ3MJ40 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC27.94■■■□□ 2.06
CCDC144BQ3MJ40 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
CCDC144BQ3MJ40 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
CCDC144BQ3MJ40 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC27.93■■■□□ 2.06
CCDC144BQ3MJ40 AC139795.1-202ENST00000500444 432 ntBASIC27.93■■■□□ 2.06
CCDC144BQ3MJ40 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC27.93■■■□□ 2.06
CCDC144BQ3MJ40 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
CCDC144BQ3MJ40 AL359504.2-201ENST00000605506 1601 ntBASIC27.92■■■□□ 2.06
CCDC144BQ3MJ40 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC27.92■■■□□ 2.06
CCDC144BQ3MJ40 BEX3-202ENST00000372634 753 ntTSL 2 BASIC27.92■■■□□ 2.06
CCDC144BQ3MJ40 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
CCDC144BQ3MJ40 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC27.92■■■□□ 2.06
CCDC144BQ3MJ40 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC27.91■■■□□ 2.06
CCDC144BQ3MJ40 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
CCDC144BQ3MJ40 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC27.91■■■□□ 2.06
CCDC144BQ3MJ40 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
CCDC144BQ3MJ40 AC018755.3-202ENST00000596210 929 ntBASIC27.91■■■□□ 2.06
CCDC144BQ3MJ40 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC27.91■■■□□ 2.06
CCDC144BQ3MJ40 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC27.9■■■□□ 2.06
CCDC144BQ3MJ40 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC27.9■■■□□ 2.06
CCDC144BQ3MJ40 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms