Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC21.56■■□□□ 1.04
CLRN1P58418 AC092296.2-201ENST00000589470 999 ntBASIC21.56■■□□□ 1.04
CLRN1P58418 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC21.56■■□□□ 1.04
CLRN1P58418 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLRN1P58418 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC21.55■■□□□ 1.04
CLRN1P58418 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
CLRN1P58418 SMPD5-203ENST00000639008 1464 ntBASIC21.55■■□□□ 1.04
CLRN1P58418 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
CLRN1P58418 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
CLRN1P58418 REST-210ENST00000638187 1334 ntTSL 5 BASIC21.55■■□□□ 1.04
CLRN1P58418 ERN1-208ENST00000606895 2068 ntBASIC21.54■■□□□ 1.04
CLRN1P58418 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CLRN1P58418 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLRN1P58418 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLRN1P58418 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC21.54■■□□□ 1.04
CLRN1P58418 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLRN1P58418 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC21.54■■□□□ 1.04
CLRN1P58418 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CLRN1P58418 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLRN1P58418 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLRN1P58418 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLRN1P58418 ECEL1P2-201ENST00000461596 1295 ntBASIC21.53■■□□□ 1.04
CLRN1P58418 PFN2-211ENST00000489155 636 ntTSL 4 BASIC21.53■■□□□ 1.04
CLRN1P58418 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
CLRN1P58418 AC025884.2-201ENST00000553429 711 ntBASIC21.53■■□□□ 1.04
CLRN1P58418 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLRN1P58418 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.53■■□□□ 1.04
CLRN1P58418 AC010501.1-201ENST00000606270 1962 ntBASIC21.53■■□□□ 1.04
CLRN1P58418 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLRN1P58418 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLRN1P58418 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLRN1P58418 GPX1-201ENST00000419349 1106 ntBASIC21.52■■□□□ 1.04
CLRN1P58418 MIR3960-201ENST00000583311 91 ntBASIC21.52■■□□□ 1.04
CLRN1P58418 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
CLRN1P58418 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CLRN1P58418 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLRN1P58418 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLRN1P58418 HES4-202ENST00000428771 1040 ntTSL 2 BASIC21.51■■□□□ 1.03
CLRN1P58418 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
CLRN1P58418 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLRN1P58418 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CLRN1P58418 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.51■■□□□ 1.03
CLRN1P58418 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC21.5■■□□□ 1.03
CLRN1P58418 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLRN1P58418 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.5■■□□□ 1.03
CLRN1P58418 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CLRN1P58418 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CLRN1P58418 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CLRN1P58418 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLRN1P58418 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLRN1P58418 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.49■■□□□ 1.03
CLRN1P58418 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLRN1P58418 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
CLRN1P58418 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC21.49■■□□□ 1.03
CLRN1P58418 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC21.49■■□□□ 1.03
CLRN1P58418 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
CLRN1P58418 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC21.48■■□□□ 1.03
CLRN1P58418 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CLRN1P58418 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
CLRN1P58418 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CLRN1P58418 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC21.48■■□□□ 1.03
CLRN1P58418 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CLRN1P58418 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CLRN1P58418 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CLRN1P58418 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CLRN1P58418 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
CLRN1P58418 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CLRN1P58418 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC21.46■■□□□ 1.03
CLRN1P58418 ABHD17AP3-201ENST00000503096 1137 ntBASIC21.46■■□□□ 1.03
CLRN1P58418 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CLRN1P58418 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CLRN1P58418 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CLRN1P58418 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CLRN1P58418 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC21.45■■□□□ 1.03
CLRN1P58418 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
CLRN1P58418 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC21.45■■□□□ 1.02
CLRN1P58418 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC21.45■■□□□ 1.02
CLRN1P58418 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
CLRN1P58418 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
CLRN1P58418 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CLRN1P58418 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC21.44■■□□□ 1.02
CLRN1P58418 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC21.44■■□□□ 1.02
CLRN1P58418 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CLRN1P58418 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.44■■□□□ 1.02
CLRN1P58418 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CLRN1P58418 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CLRN1P58418 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CLRN1P58418 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CLRN1P58418 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CLRN1P58418 RP9P-202ENST00000450133 1212 ntBASIC21.42■■□□□ 1.02
CLRN1P58418 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CLRN1P58418 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
CLRN1P58418 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
CLRN1P58418 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.41■■□□□ 1.02
CLRN1P58418 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.41■■□□□ 1.02
CLRN1P58418 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
CLRN1P58418 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CLRN1P58418 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
CLRN1P58418 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CLRN1P58418 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms