Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
VCPP55072 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC25.87■■□□□ 1.73
VCPP55072 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC25.87■■□□□ 1.73
VCPP55072 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC25.87■■□□□ 1.73
VCPP55072 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC25.87■■□□□ 1.73
VCPP55072 DUX4L9-201ENST00000449051 1259 ntBASIC25.87■■□□□ 1.73
VCPP55072 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC25.87■■□□□ 1.73
VCPP55072 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC25.87■■□□□ 1.73
VCPP55072 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
VCPP55072 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
VCPP55072 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
VCPP55072 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
VCPP55072 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
VCPP55072 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC25.86■■□□□ 1.73
VCPP55072 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC25.86■■□□□ 1.73
VCPP55072 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC25.86■■□□□ 1.73
VCPP55072 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
VCPP55072 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
VCPP55072 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC25.85■■□□□ 1.73
VCPP55072 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
VCPP55072 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC25.85■■□□□ 1.73
VCPP55072 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
VCPP55072 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
VCPP55072 REST-210ENST00000638187 1334 ntTSL 5 BASIC25.85■■□□□ 1.73
VCPP55072 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC25.85■■□□□ 1.73
VCPP55072 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
VCPP55072 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC25.84■■□□□ 1.73
VCPP55072 AC103834.1-201ENST00000520383 144 ntBASIC25.84■■□□□ 1.73
VCPP55072 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC25.84■■□□□ 1.73
VCPP55072 BEX3-202ENST00000372634 753 ntTSL 2 BASIC25.83■■□□□ 1.73
VCPP55072 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC25.83■■□□□ 1.73
VCPP55072 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC25.83■■□□□ 1.73
VCPP55072 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
VCPP55072 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC25.82■■□□□ 1.72
VCPP55072 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
VCPP55072 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC25.82■■□□□ 1.72
VCPP55072 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC25.82■■□□□ 1.72
VCPP55072 AL356441.2-201ENST00000443009 864 ntBASIC25.82■■□□□ 1.72
VCPP55072 AL359258.2-201ENST00000564063 1566 ntBASIC25.82■■□□□ 1.72
VCPP55072 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC25.81■■□□□ 1.72
VCPP55072 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
VCPP55072 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC25.81■■□□□ 1.72
VCPP55072 YBX1P4-201ENST00000392794 808 ntBASIC25.81■■□□□ 1.72
VCPP55072 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC25.81■■□□□ 1.72
VCPP55072 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
VCPP55072 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
VCPP55072 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
VCPP55072 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
VCPP55072 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC25.81■■□□□ 1.72
VCPP55072 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
VCPP55072 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC25.8■■□□□ 1.72
VCPP55072 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
VCPP55072 AC026202.3-201ENST00000600805 1127 ntBASIC25.8■■□□□ 1.72
VCPP55072 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC25.8■■□□□ 1.72
VCPP55072 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
VCPP55072 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC25.8■■□□□ 1.72
VCPP55072 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC25.8■■□□□ 1.72
VCPP55072 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC25.8■■□□□ 1.72
VCPP55072 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
VCPP55072 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC25.79■■□□□ 1.72
VCPP55072 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
VCPP55072 AC074183.2-201ENST00000623112 922 ntBASIC25.79■■□□□ 1.72
VCPP55072 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC25.79■■□□□ 1.72
VCPP55072 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC25.79■■□□□ 1.72
VCPP55072 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
VCPP55072 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
VCPP55072 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC25.78■■□□□ 1.72
VCPP55072 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC25.78■■□□□ 1.72
VCPP55072 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC25.78■■□□□ 1.72
VCPP55072 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC25.78■■□□□ 1.72
VCPP55072 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC25.78■■□□□ 1.72
VCPP55072 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
VCPP55072 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC25.78■■□□□ 1.72
VCPP55072 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC25.78■■□□□ 1.72
VCPP55072 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC25.77■■□□□ 1.72
VCPP55072 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC25.77■■□□□ 1.72
VCPP55072 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC25.77■■□□□ 1.72
VCPP55072 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
VCPP55072 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
VCPP55072 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC25.76■■□□□ 1.71
VCPP55072 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC25.76■■□□□ 1.71
VCPP55072 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC25.76■■□□□ 1.71
VCPP55072 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC25.76■■□□□ 1.71
VCPP55072 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
VCPP55072 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
VCPP55072 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
VCPP55072 AC025884.2-201ENST00000553429 711 ntBASIC25.75■■□□□ 1.71
VCPP55072 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
VCPP55072 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC25.74■■□□□ 1.71
VCPP55072 SPCS2P3-201ENST00000500401 656 ntBASIC25.74■■□□□ 1.71
VCPP55072 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC25.74■■□□□ 1.71
VCPP55072 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC25.73■■□□□ 1.71
VCPP55072 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC25.73■■□□□ 1.71
VCPP55072 PVT1_1.1-201ENST00000615125 194 ntBASIC25.73■■□□□ 1.71
VCPP55072 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC25.73■■□□□ 1.71
VCPP55072 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC25.72■■□□□ 1.71
VCPP55072 SMPD5-203ENST00000639008 1464 ntBASIC25.72■■□□□ 1.71
VCPP55072 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC25.72■■□□□ 1.71
VCPP55072 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
VCPP55072 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC25.72■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms