Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC32.72■■■□□ 2.83
COL18A1P39060 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC32.71■■■□□ 2.83
COL18A1P39060 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC32.71■■■□□ 2.83
COL18A1P39060 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC32.71■■■□□ 2.83
COL18A1P39060 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC32.7■■■□□ 2.83
COL18A1P39060 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC32.7■■■□□ 2.83
COL18A1P39060 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC32.7■■■□□ 2.82
COL18A1P39060 UNC93B8-201ENST00000511903 705 ntBASIC32.7■■■□□ 2.82
COL18A1P39060 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC32.7■■■□□ 2.82
COL18A1P39060 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC32.7■■■□□ 2.82
COL18A1P39060 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.82
COL18A1P39060 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
COL18A1P39060 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
COL18A1P39060 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC32.69■■■□□ 2.82
COL18A1P39060 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
COL18A1P39060 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC32.67■■■□□ 2.82
COL18A1P39060 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC32.66■■■□□ 2.82
COL18A1P39060 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC32.66■■■□□ 2.82
COL18A1P39060 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC32.66■■■□□ 2.82
COL18A1P39060 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC32.66■■■□□ 2.82
COL18A1P39060 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC32.65■■■□□ 2.82
COL18A1P39060 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
COL18A1P39060 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC32.65■■■□□ 2.82
COL18A1P39060 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
COL18A1P39060 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
COL18A1P39060 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC32.65■■■□□ 2.82
COL18A1P39060 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC32.65■■■□□ 2.82
COL18A1P39060 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
COL18A1P39060 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC32.64■■■□□ 2.82
COL18A1P39060 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC32.64■■■□□ 2.82
COL18A1P39060 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC32.64■■■□□ 2.82
COL18A1P39060 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
COL18A1P39060 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
COL18A1P39060 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC32.62■■■□□ 2.81
COL18A1P39060 MIR4787-201ENST00000607364 84 ntBASIC32.62■■■□□ 2.81
COL18A1P39060 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
COL18A1P39060 AC022616.5-201ENST00000518796 181 ntBASIC32.61■■■□□ 2.81
COL18A1P39060 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC32.61■■■□□ 2.81
COL18A1P39060 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
COL18A1P39060 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
COL18A1P39060 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC32.6■■■□□ 2.81
COL18A1P39060 BX664725.1-201ENST00000438252 379 ntBASIC32.6■■■□□ 2.81
COL18A1P39060 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
COL18A1P39060 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
COL18A1P39060 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC32.6■■■□□ 2.81
COL18A1P39060 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC32.59■■■□□ 2.81
COL18A1P39060 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC32.59■■■□□ 2.81
COL18A1P39060 ABCB10P1-201ENST00000614297 2181 ntBASIC32.59■■■□□ 2.81
COL18A1P39060 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC32.59■■■□□ 2.81
COL18A1P39060 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
COL18A1P39060 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC32.58■■■□□ 2.81
COL18A1P39060 AL449106.1-201ENST00000608517 1980 ntBASIC32.58■■■□□ 2.81
COL18A1P39060 KRT16P3-201ENST00000439127 1283 ntBASIC32.58■■■□□ 2.81
COL18A1P39060 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC32.58■■■□□ 2.81
COL18A1P39060 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC32.57■■■□□ 2.8
COL18A1P39060 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC32.57■■■□□ 2.8
COL18A1P39060 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC32.57■■■□□ 2.8
COL18A1P39060 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
COL18A1P39060 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
COL18A1P39060 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
COL18A1P39060 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC32.56■■■□□ 2.8
COL18A1P39060 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC32.55■■■□□ 2.8
COL18A1P39060 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
COL18A1P39060 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC32.55■■■□□ 2.8
COL18A1P39060 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
COL18A1P39060 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC32.55■■■□□ 2.8
COL18A1P39060 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
COL18A1P39060 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC32.55■■■□□ 2.8
COL18A1P39060 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
COL18A1P39060 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC32.53■■■□□ 2.8
COL18A1P39060 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC32.53■■■□□ 2.8
COL18A1P39060 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
COL18A1P39060 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
COL18A1P39060 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC32.51■■■□□ 2.8
COL18A1P39060 KRT18P24-201ENST00000344739 1156 ntBASIC32.51■■■□□ 2.79
COL18A1P39060 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC32.51■■■□□ 2.79
COL18A1P39060 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC32.51■■■□□ 2.79
COL18A1P39060 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC32.51■■■□□ 2.79
COL18A1P39060 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC32.51■■■□□ 2.79
COL18A1P39060 AC131281.2-201ENST00000520478 145 ntBASIC32.51■■■□□ 2.79
COL18A1P39060 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC32.51■■■□□ 2.79
COL18A1P39060 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.79
COL18A1P39060 AC008406.3-201ENST00000620001 1374 ntBASIC32.5■■■□□ 2.79
COL18A1P39060 KRT125P-201ENST00000546827 989 ntBASIC32.5■■■□□ 2.79
COL18A1P39060 AC137630.3-201ENST00000607245 391 ntBASIC32.5■■■□□ 2.79
COL18A1P39060 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
COL18A1P39060 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
COL18A1P39060 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC32.5■■■□□ 2.79
COL18A1P39060 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC32.49■■■□□ 2.79
COL18A1P39060 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC32.49■■■□□ 2.79
COL18A1P39060 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
COL18A1P39060 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC32.49■■■□□ 2.79
COL18A1P39060 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
COL18A1P39060 MIR638-201ENST00000385237 100 ntBASIC32.47■■■□□ 2.79
COL18A1P39060 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC32.47■■■□□ 2.79
COL18A1P39060 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC32.47■■■□□ 2.79
COL18A1P39060 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC32.47■■■□□ 2.79
COL18A1P39060 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC32.46■■■□□ 2.79
COL18A1P39060 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
COL18A1P39060 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC32.46■■■□□ 2.79
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms