Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
COL5A3P25940 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
COL5A3P25940 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC31.22■■■□□ 2.59
COL5A3P25940 UNC93B8-201ENST00000511903 705 ntBASIC31.22■■■□□ 2.59
COL5A3P25940 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
COL5A3P25940 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC31.22■■■□□ 2.59
COL5A3P25940 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
COL5A3P25940 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC31.21■■■□□ 2.59
COL5A3P25940 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC31.21■■■□□ 2.59
COL5A3P25940 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
COL5A3P25940 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
COL5A3P25940 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
COL5A3P25940 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC31.21■■■□□ 2.59
COL5A3P25940 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
COL5A3P25940 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC31.21■■■□□ 2.59
COL5A3P25940 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
COL5A3P25940 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
COL5A3P25940 BX664725.1-201ENST00000438252 379 ntBASIC31.2■■■□□ 2.58
COL5A3P25940 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC31.2■■■□□ 2.58
COL5A3P25940 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC31.2■■■□□ 2.58
COL5A3P25940 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
COL5A3P25940 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC31.19■■■□□ 2.58
COL5A3P25940 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC31.19■■■□□ 2.58
COL5A3P25940 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
COL5A3P25940 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC31.19■■■□□ 2.58
COL5A3P25940 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
COL5A3P25940 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC31.19■■■□□ 2.58
COL5A3P25940 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
COL5A3P25940 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC31.18■■■□□ 2.58
COL5A3P25940 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
COL5A3P25940 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
COL5A3P25940 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC31.18■■■□□ 2.58
COL5A3P25940 KRT16P3-201ENST00000439127 1283 ntBASIC31.18■■■□□ 2.58
COL5A3P25940 AC022616.5-201ENST00000518796 181 ntBASIC31.18■■■□□ 2.58
COL5A3P25940 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC31.18■■■□□ 2.58
COL5A3P25940 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
COL5A3P25940 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
COL5A3P25940 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
COL5A3P25940 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
COL5A3P25940 MIR4787-201ENST00000607364 84 ntBASIC31.15■■■□□ 2.58
COL5A3P25940 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC31.15■■■□□ 2.58
COL5A3P25940 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
COL5A3P25940 AL449106.1-201ENST00000608517 1980 ntBASIC31.14■■■□□ 2.58
COL5A3P25940 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC31.13■■■□□ 2.57
COL5A3P25940 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC31.13■■■□□ 2.57
COL5A3P25940 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC31.13■■■□□ 2.57
COL5A3P25940 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
COL5A3P25940 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
COL5A3P25940 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC31.12■■■□□ 2.57
COL5A3P25940 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC31.12■■■□□ 2.57
COL5A3P25940 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC31.12■■■□□ 2.57
COL5A3P25940 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
COL5A3P25940 ABCB10P1-201ENST00000614297 2181 ntBASIC31.12■■■□□ 2.57
COL5A3P25940 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
COL5A3P25940 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC31.12■■■□□ 2.57
COL5A3P25940 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC31.12■■■□□ 2.57
COL5A3P25940 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
COL5A3P25940 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
COL5A3P25940 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC31.1■■■□□ 2.57
COL5A3P25940 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
COL5A3P25940 AC131281.2-201ENST00000520478 145 ntBASIC31.1■■■□□ 2.57
COL5A3P25940 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC31.09■■■□□ 2.57
COL5A3P25940 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
COL5A3P25940 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
COL5A3P25940 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
COL5A3P25940 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC31.08■■■□□ 2.57
COL5A3P25940 KRT125P-201ENST00000546827 989 ntBASIC31.08■■■□□ 2.57
COL5A3P25940 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
COL5A3P25940 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC31.07■■■□□ 2.56
COL5A3P25940 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
COL5A3P25940 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC31.07■■■□□ 2.56
COL5A3P25940 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
COL5A3P25940 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
COL5A3P25940 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC31.06■■■□□ 2.56
COL5A3P25940 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
COL5A3P25940 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC31.06■■■□□ 2.56
COL5A3P25940 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC31.05■■■□□ 2.56
COL5A3P25940 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC31.05■■■□□ 2.56
COL5A3P25940 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC31.05■■■□□ 2.56
COL5A3P25940 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC31.05■■■□□ 2.56
COL5A3P25940 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC31.05■■■□□ 2.56
COL5A3P25940 AC008406.3-201ENST00000620001 1374 ntBASIC31.05■■■□□ 2.56
COL5A3P25940 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
COL5A3P25940 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC31.04■■■□□ 2.56
COL5A3P25940 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC31.03■■■□□ 2.56
COL5A3P25940 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC31.03■■■□□ 2.56
COL5A3P25940 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC31.03■■■□□ 2.56
COL5A3P25940 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC31.03■■■□□ 2.56
COL5A3P25940 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
COL5A3P25940 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC31.02■■■□□ 2.56
COL5A3P25940 KRT18P24-201ENST00000344739 1156 ntBASIC31.02■■■□□ 2.56
COL5A3P25940 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC31.02■■■□□ 2.56
COL5A3P25940 MIR4281-201ENST00000580852 62 ntBASIC31.02■■■□□ 2.56
COL5A3P25940 AC137630.3-201ENST00000607245 391 ntBASIC31.02■■■□□ 2.56
COL5A3P25940 DRD5P2-201ENST00000421395 2012 ntBASIC31.02■■■□□ 2.56
COL5A3P25940 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
COL5A3P25940 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC31.01■■■□□ 2.55
COL5A3P25940 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
COL5A3P25940 MIR638-201ENST00000385237 100 ntBASIC31■■■□□ 2.55
COL5A3P25940 KRT18P10-201ENST00000388836 1287 ntBASIC31■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms