Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
TRAV40A0A0B4J280 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC19.76■□□□□ 0.75
TRAV40A0A0B4J280 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
TRAV40A0A0B4J280 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRAV40A0A0B4J280 AP004609.3-201ENST00000610705 1884 ntBASIC19.75■□□□□ 0.75
TRAV40A0A0B4J280 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC19.75■□□□□ 0.75
TRAV40A0A0B4J280 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
TRAV40A0A0B4J280 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC19.75■□□□□ 0.75
TRAV40A0A0B4J280 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRAV40A0A0B4J280 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRAV40A0A0B4J280 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRAV40A0A0B4J280 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
TRAV40A0A0B4J280 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRAV40A0A0B4J280 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TRAV40A0A0B4J280 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRAV40A0A0B4J280 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC19.74■□□□□ 0.75
TRAV40A0A0B4J280 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TRAV40A0A0B4J280 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC19.74■□□□□ 0.75
TRAV40A0A0B4J280 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRAV40A0A0B4J280 AL451085.2-201ENST00000605085 799 ntBASIC19.74■□□□□ 0.75
TRAV40A0A0B4J280 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC19.73■□□□□ 0.75
TRAV40A0A0B4J280 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRAV40A0A0B4J280 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC19.73■□□□□ 0.75
TRAV40A0A0B4J280 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRAV40A0A0B4J280 PVT1_1.1-201ENST00000615125 194 ntBASIC19.73■□□□□ 0.75
TRAV40A0A0B4J280 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TRAV40A0A0B4J280 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRAV40A0A0B4J280 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRAV40A0A0B4J280 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRAV40A0A0B4J280 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRAV40A0A0B4J280 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRAV40A0A0B4J280 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC19.71■□□□□ 0.75
TRAV40A0A0B4J280 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRAV40A0A0B4J280 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC19.71■□□□□ 0.75
TRAV40A0A0B4J280 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRAV40A0A0B4J280 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC19.71■□□□□ 0.75
TRAV40A0A0B4J280 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV40A0A0B4J280 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
TRAV40A0A0B4J280 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV40A0A0B4J280 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV40A0A0B4J280 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV40A0A0B4J280 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
TRAV40A0A0B4J280 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC19.7■□□□□ 0.74
TRAV40A0A0B4J280 AL035685.1-201ENST00000636663 812 ntBASIC19.7■□□□□ 0.74
TRAV40A0A0B4J280 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC19.7■□□□□ 0.74
TRAV40A0A0B4J280 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV40A0A0B4J280 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV40A0A0B4J280 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
TRAV40A0A0B4J280 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV40A0A0B4J280 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV40A0A0B4J280 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV40A0A0B4J280 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC19.69■□□□□ 0.74
TRAV40A0A0B4J280 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC19.69■□□□□ 0.74
TRAV40A0A0B4J280 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC19.69■□□□□ 0.74
TRAV40A0A0B4J280 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV40A0A0B4J280 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC19.69■□□□□ 0.74
TRAV40A0A0B4J280 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV40A0A0B4J280 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV40A0A0B4J280 SHF-208ENST00000560734 1731 ntTSL 3 BASIC19.68■□□□□ 0.74
TRAV40A0A0B4J280 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV40A0A0B4J280 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV40A0A0B4J280 RPS2P7-201ENST00000447334 885 ntBASIC19.68■□□□□ 0.74
TRAV40A0A0B4J280 AC103834.1-201ENST00000520383 144 ntBASIC19.68■□□□□ 0.74
TRAV40A0A0B4J280 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC19.68■□□□□ 0.74
TRAV40A0A0B4J280 AC087393.1-201ENST00000582896 145 ntBASIC19.68■□□□□ 0.74
TRAV40A0A0B4J280 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC19.67■□□□□ 0.74
TRAV40A0A0B4J280 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV40A0A0B4J280 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV40A0A0B4J280 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV40A0A0B4J280 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV40A0A0B4J280 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV40A0A0B4J280 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
TRAV40A0A0B4J280 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV40A0A0B4J280 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV40A0A0B4J280 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV40A0A0B4J280 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV40A0A0B4J280 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC19.66■□□□□ 0.74
TRAV40A0A0B4J280 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV40A0A0B4J280 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV40A0A0B4J280 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV40A0A0B4J280 IDNK-201ENST00000376417 511 ntTSL 5 BASIC19.66■□□□□ 0.74
TRAV40A0A0B4J280 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV40A0A0B4J280 MTX2-204ENST00000443241 799 ntTSL 3 BASIC19.66■□□□□ 0.74
TRAV40A0A0B4J280 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC19.66■□□□□ 0.74
TRAV40A0A0B4J280 MIR4508-201ENST00000584178 70 ntBASIC19.66■□□□□ 0.74
TRAV40A0A0B4J280 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV40A0A0B4J280 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC19.66■□□□□ 0.74
TRAV40A0A0B4J280 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
TRAV40A0A0B4J280 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV40A0A0B4J280 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRAV40A0A0B4J280 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV40A0A0B4J280 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC19.64■□□□□ 0.73
TRAV40A0A0B4J280 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV40A0A0B4J280 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV40A0A0B4J280 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV40A0A0B4J280 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV40A0A0B4J280 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV40A0A0B4J280 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV40A0A0B4J280 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV40A0A0B4J280 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms