Protein–RNA interactions for Protein: Q9Y2R4

DDX52, Probable ATP-dependent RNA helicase DDX52, humanhuman

Known RBP eCLIP

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX52Q9Y2R4 VPS28-207ENST00000526977 2036 ntTSL 522.11■■□□□ 1.131e-7■■■■□ 24.2
DDX52Q9Y2R4 VPS28-213ENST00000530983 2337 ntTSL 521.85■■□□□ 1.091e-7■■■■□ 24.2
DDX52Q9Y2R4 D2HGDH-213ENST00000470343 1026 ntTSL 1 (best)21.51■■□□□ 1.031e-7■■■■□ 24.2
DDX52Q9Y2R4 VPS28-215ENST00000531924 695 ntTSL 317.42■□□□□ 0.381e-7■■■■□ 24.2
DDX52Q9Y2R4 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.131e-7■■■■□ 24.2
DDX52Q9Y2R4 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC15.89■□□□□ 0.131e-7■■■■□ 24.2
DDX52Q9Y2R4 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC15.89■□□□□ 0.131e-7■■■■□ 24.2
DDX52Q9Y2R4 VPS28-216ENST00000533806 650 ntTSL 315.48■□□□□ 0.071e-7■■■■□ 24.2
DDX52Q9Y2R4 VPS28-214ENST00000531032 573 ntTSL 1 (best)13.49□□□□□ -0.251e-7■■■■□ 24.2
DDX52Q9Y2R4 VPS28-204ENST00000526054 892 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.51e-7■■■■□ 24.2
DDX52Q9Y2R4 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC18.17■□□□□ 0.53e-6■■■■□ 24.2
DDX52Q9Y2R4 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC17.05■□□□□ 0.323e-6■■■■□ 24.2
DDX52Q9Y2R4 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.093e-6■■■■□ 24.1
DDX52Q9Y2R4 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC14.37□□□□□ -0.113e-6■■■■□ 24.1
DDX52Q9Y2R4 DVL1-203ENST00000472445 639 ntTSL 221.39■■□□□ 1.011e-6■■■■□ 24
DDX52Q9Y2R4 SPEN-201ENST00000375759 12232 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.833e-6■■■■□ 24
DDX52Q9Y2R4 SEPT5-208ENST00000431124 920 ntTSL 518.47■□□□□ 0.552e-6■■■■□ 24
DDX52Q9Y2R4 KDM4B-207ENST00000588961 560 ntTSL 410.05□□□□□ -0.83e-6■■■■□ 23.8
DDX52Q9Y2R4 CBFA2T3-210ENST00000569464 1327 ntTSL 1 (best)16.44■□□□□ 0.221e-6■■■■□ 23.8
DDX52Q9Y2R4 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -01e-6■■■■□ 23.8
DDX52Q9Y2R4 UBE2J2-219ENST00000503294 814 ntTSL 424.68■■□□□ 1.542e-6■■■■□ 23.8
DDX52Q9Y2R4 UBE2J2-206ENST00000422076 643 ntTSL 524.68■■□□□ 1.542e-6■■■■□ 23.8
DDX52Q9Y2R4 UBE2J2-217ENST00000491779 611 ntTSL 222.4■■□□□ 1.182e-6■■■■□ 23.8
DDX52Q9Y2R4 UBE2J2-211ENST00000466752 886 ntTSL 322.4■■□□□ 1.182e-6■■■■□ 23.8
DDX52Q9Y2R4 UBE2J2-218ENST00000502382 530 ntTSL 419.24■□□□□ 0.672e-6■■■■□ 23.8
DDX52Q9Y2R4 UBE2J2-215ENST00000477894 767 ntTSL 518.9■□□□□ 0.622e-6■■■■□ 23.8
DDX52Q9Y2R4 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.417e-6■■■■□ 23.8
DDX52Q9Y2R4 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.83■□□□□ 0.127e-6■■■■□ 23.8
DDX52Q9Y2R4 PTPRF-206ENST00000429895 6312 ntTSL 1 (best)15.51■□□□□ 0.077e-6■■■■□ 23.8
DDX52Q9Y2R4 PTPRF-205ENST00000414879 4836 ntTSL 212.85□□□□□ -0.357e-6■■■■□ 23.8
DDX52Q9Y2R4 PTPRF-204ENST00000412568 4154 ntTSL 512.21□□□□□ -0.457e-6■■■■□ 23.8
DDX52Q9Y2R4 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.476e-7■■■■□ 23.8
DDX52Q9Y2R4 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.933e-6■■■■□ 23.7
DDX52Q9Y2R4 TAF4-207ENST00000608887 284 ntTSL 411.02□□□□□ -0.653e-6■■■■□ 23.7
DDX52Q9Y2R4 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC24.18■■□□□ 1.463e-6■■■■□ 23.7
DDX52Q9Y2R4 FAM229A-202ENST00000416512 2759 ntTSL 1 (best)21.9■■□□□ 1.13e-6■■■■□ 23.7
DDX52Q9Y2R4 GSE1-204ENST00000411612 872 ntTSL 525.92■■□□□ 1.742e-6■■■■□ 23.7
DDX52Q9Y2R4 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.272e-6■■■■□ 23.7
DDX52Q9Y2R4 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC12.85□□□□□ -0.352e-6■■■■□ 23.7
DDX52Q9Y2R4 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC32.19■■■□□ 2.747e-6■■■■□ 23.6
DDX52Q9Y2R4 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.87e-6■■■■□ 23.6
DDX52Q9Y2R4 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.717e-6■■■■□ 23.6
DDX52Q9Y2R4 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC18.66■□□□□ 0.587e-6■■■■□ 23.6
DDX52Q9Y2R4 COQ8A-207ENST00000485462 2141 ntTSL 1 (best)17.96■□□□□ 0.477e-6■■■■□ 23.6
DDX52Q9Y2R4 COQ8A-205ENST00000478406 3612 ntTSL 216.8■□□□□ 0.287e-6■■■■□ 23.6
DDX52Q9Y2R4 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.117e-6■■■■□ 23.6
DDX52Q9Y2R4 INPP5A-204ENST00000423490 416 ntTSL 56.64□□□□□ -1.357e-6■■■■□ 23.6
DDX52Q9Y2R4 MACROD1-206ENST00000542359 459 ntTSL 318.51■□□□□ 0.551e-6■■■■□ 23.5
DDX52Q9Y2R4 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.752e-6■■■■□ 23.5
DDX52Q9Y2R4 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC26.53■■□□□ 1.843e-6■■■■□ 23.4
DDX52Q9Y2R4 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC23.21■■□□□ 1.313e-6■■■■□ 23.4
DDX52Q9Y2R4 KCNIP2-205ENST00000355657 2617 ntTSL 222.9■■□□□ 1.263e-6■■■■□ 23.4
DDX52Q9Y2R4 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC19.98■□□□□ 0.793e-6■■■■□ 23.4
DDX52Q9Y2R4 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC16.21■□□□□ 0.193e-6■■■■□ 23.4
DDX52Q9Y2R4 KCNIP2-204ENST00000353068 684 ntTSL 1 (best) BASIC11.1□□□□□ -0.633e-6■■■■□ 23.4
DDX52Q9Y2R4 KCNIP2-201ENST00000239117 555 ntTSL 1 (best)10.85□□□□□ -0.673e-6■■■■□ 23.4
DDX52Q9Y2R4 KCNIP2-202ENST00000343195 663 ntAPPRIS P3 TSL 1 (best) BASIC9.29□□□□□ -0.923e-6■■■■□ 23.4
DDX52Q9Y2R4 KCNIP2-212ENST00000472764 847 ntTSL 58.82□□□□□ -13e-6■■■■□ 23.4
DDX52Q9Y2R4 KCNIP2-211ENST00000461105 858 ntTSL 1 (best) BASIC7.98□□□□□ -1.133e-6■■■■□ 23.4
DDX52Q9Y2R4 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC20■□□□□ 0.793e-6■■■■□ 23.4
DDX52Q9Y2R4 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.683e-6■■■■□ 23.4
DDX52Q9Y2R4 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC18.78■□□□□ 0.63e-6■■■■□ 23.4
DDX52Q9Y2R4 ACER3-214ENST00000534206 834 ntTSL 533.83■■■■□ 3.013e-9■■■■□ 23.2
DDX52Q9Y2R4 ACER3-211ENST00000531461 1292 ntTSL 228.52■■■□□ 2.163e-9■■■■□ 23.2
DDX52Q9Y2R4 ACER3-207ENST00000530182 551 ntTSL 528.4■■■□□ 2.143e-9■■■■□ 23.2
DDX52Q9Y2R4 ACER3-204ENST00000525861 2058 ntTSL 227.23■■□□□ 1.953e-9■■■■□ 23.2
DDX52Q9Y2R4 ACER3-202ENST00000525194 846 ntTSL 1 (best)26.09■■□□□ 1.773e-9■■■■□ 23.2
DDX52Q9Y2R4 ACER3-201ENST00000278544 3500 ntTSL 1 (best)15.55■□□□□ 0.083e-9■■■■□ 23.2
DDX52Q9Y2R4 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC14.98□□□□□ -0.013e-9■■■■□ 23.2
DDX52Q9Y2R4 ACER3-210ENST00000531352 2093 ntTSL 1 (best)13.89□□□□□ -0.193e-9■■■■□ 23.2
DDX52Q9Y2R4 ACER3-212ENST00000532485 7378 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.893e-9■■■■□ 23.2
DDX52Q9Y2R4 ACER3-213ENST00000533873 929 ntTSL 2 BASIC8.12□□□□□ -1.113e-9■■■■□ 23.2
DDX52Q9Y2R4 ACER3-208ENST00000530334 931 ntTSL 26.72□□□□□ -1.333e-9■■■■□ 23.2
DDX52Q9Y2R4 PKP4-209ENST00000479398 550 ntTSL 524.61■■□□□ 1.531e-6■■■■□ 23.2
DDX52Q9Y2R4 PKP4-205ENST00000426248 4134 ntTSL 1 (best)17.64■□□□□ 0.411e-6■■■■□ 23.2
DDX52Q9Y2R4 PKP4-206ENST00000452162 2359 ntTSL 1 (best)12.37□□□□□ -0.431e-6■■■■□ 23.2
DDX52Q9Y2R4 PKP4-203ENST00000411900 552 ntTSL 411.93□□□□□ -0.51e-6■■■■□ 23.2
DDX52Q9Y2R4 PKP4-201ENST00000389757 5777 ntAPPRIS ALT1 TSL 1 (best) BASIC10.9□□□□□ -0.661e-6■■■■□ 23.2
DDX52Q9Y2R4 PKP4-207ENST00000457109 520 ntTSL 310.38□□□□□ -0.751e-6■■■■□ 23.2
DDX52Q9Y2R4 PKP4-202ENST00000389759 4443 ntAPPRIS P4 TSL 1 (best) BASIC9□□□□□ -0.971e-6■■■■□ 23.2
DDX52Q9Y2R4 PKP4-217ENST00000628904 3856 ntTSL 5 BASIC8.4□□□□□ -1.071e-6■■■■□ 23.2
DDX52Q9Y2R4 RPH3AL-221ENST00000577079 814 ntAPPRIS ALT2 TSL 319.95■□□□□ 0.782e-7■■■■□ 23.1
DDX52Q9Y2R4 RPH3AL-218ENST00000575736 566 ntTSL 519.81■□□□□ 0.762e-7■■■■□ 23.1
DDX52Q9Y2R4 RPH3AL-220ENST00000576420 820 ntAPPRIS ALT2 TSL 319.19■□□□□ 0.662e-7■■■■□ 23.1
DDX52Q9Y2R4 RPH3AL-215ENST00000574953 692 ntAPPRIS ALT2 TSL 518.53■□□□□ 0.562e-7■■■■□ 23.1
DDX52Q9Y2R4 RPH3AL-214ENST00000574722 586 ntTSL 418.29■□□□□ 0.522e-7■■■■□ 23.1
DDX52Q9Y2R4 RPH3AL-204ENST00000570638 537 ntTSL 518.29■□□□□ 0.522e-7■■■■□ 23.1
DDX52Q9Y2R4 RPH3AL-212ENST00000573780 531 ntTSL 416.74■□□□□ 0.272e-7■■■■□ 23.1
DDX52Q9Y2R4 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.265e-7■■■■□ 23.1
DDX52Q9Y2R4 DHRS3-201ENST00000430996 826 ntTSL 322.37■■□□□ 1.175e-7■■■■□ 23.1
DDX52Q9Y2R4 DHRS3-203ENST00000482265 1036 ntTSL 318.07■□□□□ 0.485e-7■■■■□ 23.1
DDX52Q9Y2R4 DHRS3-202ENST00000464917 539 ntTSL 315.68■□□□□ 0.15e-7■■■■□ 23.1
DDX52Q9Y2R4 BBC3-205ENST00000598636 900 ntTSL 228.36■■■□□ 2.131e-7■■■■□ 23.1
DDX52Q9Y2R4 AL163953.1-201ENST00000436530 726 ntTSL 3 BASIC12.54□□□□□ -0.47e-6■■■■□ 23.1
DDX52Q9Y2R4 DRD4-202ENST00000528733 361 ntTSL 318.11■□□□□ 0.493e-7■■■■□ 23
DDX52Q9Y2R4 EGFL7-207ENST00000492862 723 ntTSL 521.33■■□□□ 1.016e-7■■■■□ 23
DDX52Q9Y2R4 HNRNPF-202ENST00000356053 2670 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.112e-7■■■■□ 23
DDX52Q9Y2R4 KDM4B-206ENST00000588361 3039 ntTSL 217.27■□□□□ 0.362e-6■■■■□ 23
DDX52Q9Y2R4 KDM4B-208ENST00000589104 3470 ntTSL 215.38■□□□□ 0.052e-6■■■■□ 23
DDX52Q9Y2R4 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.042e-6■■■■□ 22.9
Retrieved 100 of 4,483 protein–RNA pairs in 52.3 ms