RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 NISCHQ9Y2I1 1504 aa22.2■■□□□ 1.14
PTPRF-205ENST00000414879 DCAF8L2P0C7V8 631 aa21.03■□□□□ 0.96
PTPRF-205ENST00000414879 SUPT5HO00267 1087 aaKnown RBP19.84■□□□□ 0.77
PTPRF-205ENST00000414879 SHROOM4Q9ULL8 1493 aa19.68■□□□□ 0.74
PTPRF-205ENST00000414879 CCDC180Q9P1Z9 1646 aa19.34■□□□□ 0.69
PTPRF-205ENST00000414879 FAM9AQ8IZU1 332 aaPredicted RBP18.98■□□□□ 0.63
PTPRF-205ENST00000414879 APLP2Q06481 763 aa18.92■□□□□ 0.62
PTPRF-205ENST00000414879 TRIM41Q8WV44 630 aa18.7■□□□□ 0.58
PTPRF-205ENST00000414879 ZCCHC6Q5VYS8 1495 aaKnown RBP18.66■□□□□ 0.58
PTPRF-205ENST00000414879 EHMT2Q96KQ7 1210 aa18.55■□□□□ 0.56
PTPRF-205ENST00000414879 ABCC9O60706 1549 aa18.46■□□□□ 0.55
PTPRF-205ENST00000414879 DCAF1Q9Y4B6 1507 aa18.41■□□□□ 0.54
PTPRF-205ENST00000414879 UBTFP17480 764 aaKnown RBP18.32■□□□□ 0.52
PTPRF-205ENST00000414879 ZEB1P37275 1124 aaPredicted RBP18.27■□□□□ 0.52
PTPRF-205ENST00000414879 MYO15BQ96JP2 1530 aa18.13■□□□□ 0.49
PTPRF-205ENST00000414879 PELP1Q8IZL8 1130 aaKnown RBP18.12■□□□□ 0.49
PTPRF-205ENST00000414879 PCGF6Q9BYE7 350 aa18.08■□□□□ 0.48
PTPRF-205ENST00000414879 ATP1B4Q9UN42 357 aaPredicted RBP18.06■□□□□ 0.48
PTPRF-205ENST00000414879 RANGAP1P46060 587 aaPredicted RBP18.04■□□□□ 0.48
PTPRF-205ENST00000414879 NACADO15069 1562 aa18.03■□□□□ 0.48
PTPRF-205ENST00000414879 CHIC1Q5VXU3 224 aa18.02■□□□□ 0.48
PTPRF-205ENST00000414879 PABPN1Q86U42 306 aaKnown RBP eCLIP17.99■□□□□ 0.47
PTPRF-205ENST00000414879 CCER1Q8TC90 406 aaPredicted RBP17.93■□□□□ 0.46
PTPRF-205ENST00000414879 TTBK1Q5TCY1 1321 aaPredicted RBP17.92■□□□□ 0.46
PTPRF-205ENST00000414879 RB1CC1Q8TDY2 1594 aa17.87■□□□□ 0.45
PTPRF-205ENST00000414879 TRIM26Q12899 539 aaPredicted RBP17.84■□□□□ 0.45
PTPRF-205ENST00000414879 SCRIBQ14160 1630 aa17.78■□□□□ 0.44
PTPRF-205ENST00000414879 CENPBP07199 599 aaPredicted RBP17.67■□□□□ 0.42
PTPRF-205ENST00000414879 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.64■□□□□ 0.42
PTPRF-205ENST00000414879 HNRNPUL2Q1KMD3 747 aaKnown RBP17.64■□□□□ 0.42
PTPRF-205ENST00000414879 LOC105371045A0A1W2PR82 267 aa17.57■□□□□ 0.4
PTPRF-205ENST00000414879 CSRNP3Q8WYN3 585 aa17.45■□□□□ 0.38
PTPRF-205ENST00000414879 MYT1LQ9UL68 1186 aa17.44■□□□□ 0.38
PTPRF-205ENST00000414879 PPARGC1BQ86YN6 1023 aaKnown RBP17.4■□□□□ 0.38
PTPRF-205ENST00000414879 ITGAEP38570 1179 aa17.36■□□□□ 0.37
PTPRF-205ENST00000414879 HRCP23327 699 aa17.32■□□□□ 0.36
PTPRF-205ENST00000414879 NEFLP07196 543 aa17.28■□□□□ 0.36
PTPRF-205ENST00000414879 RSF1Q96T23 1441 aaPredicted RBP17.27■□□□□ 0.36
PTPRF-205ENST00000414879 BAZ1AQ9NRL2 1556 aaPredicted RBP17.25■□□□□ 0.35
PTPRF-205ENST00000414879 CDK11AQ9UQ88 783 aaPredicted RBP17.24■□□□□ 0.35
PTPRF-205ENST00000414879 EEA1Q15075 1411 aa17.22■□□□□ 0.35
PTPRF-205ENST00000414879 FAM50AQ14320 339 aaKnown RBP17.22■□□□□ 0.35
PTPRF-205ENST00000414879 FBLN2P98095 1184 aa17.21■□□□□ 0.34
PTPRF-205ENST00000414879 BAZ1BQ9UIG0 1483 aaKnown RBP17.18■□□□□ 0.34
PTPRF-205ENST00000414879 TRIM52Q96A61 297 aa17.08■□□□□ 0.32
PTPRF-205ENST00000414879 CECR2Q9BXF3 1484 aa17.07■□□□□ 0.32
PTPRF-205ENST00000414879 UNC13AQ9UPW8 1703 aa17.06■□□□□ 0.32
PTPRF-205ENST00000414879 MROH2BQ7Z745 1585 aa17.05■□□□□ 0.32
PTPRF-205ENST00000414879 SMARCA4P51532 1647 aa17.02■□□□□ 0.31
PTPRF-205ENST00000414879 WRNQ14191 1432 aaPredicted RBP eCLIP16.99■□□□□ 0.31
PTPRF-205ENST00000414879 ERICH6Q7L0X2 663 aa16.97■□□□□ 0.31
PTPRF-205ENST00000414879 ACIN1Q9UKV3 1341 aaKnown RBP16.96■□□□□ 0.31
PTPRF-205ENST00000414879 SMARCA2P51531 1590 aa16.95■□□□□ 0.3
PTPRF-205ENST00000414879 POLR3GLQ9BT43 218 aa16.95■□□□□ 0.3
PTPRF-205ENST00000414879 TOP2AP11388 1531 aaKnown RBP16.93■□□□□ 0.3
PTPRF-205ENST00000414879 NPM1P06748 294 aaKnown RBP eCLIP16.93■□□□□ 0.3
PTPRF-205ENST00000414879 P3H3Q8IVL6 736 aa16.93■□□□□ 0.3
PTPRF-205ENST00000414879 WIZO95785 1651 aa16.92■□□□□ 0.3
PTPRF-205ENST00000414879 YTHDC1Q96MU7 727 aaKnown RBP16.92■□□□□ 0.3
PTPRF-205ENST00000414879 KIF27Q86VH2 1401 aa16.92■□□□□ 0.3
PTPRF-205ENST00000414879 BICRAQ9NZM4 1560 aa16.91■□□□□ 0.3
PTPRF-205ENST00000414879 GOLGA3Q08378 1498 aa16.91■□□□□ 0.3
PTPRF-205ENST00000414879 CHMP7Q8WUX9 453 aaPredicted RBP16.87■□□□□ 0.29
PTPRF-205ENST00000414879 CLIP1P30622 1438 aa16.85■□□□□ 0.29
PTPRF-205ENST00000414879 CEP164Q9UPV0 1460 aa16.83■□□□□ 0.29
PTPRF-205ENST00000414879 DIEXFQ68CQ4 756 aaKnown RBP16.83■□□□□ 0.28
PTPRF-205ENST00000414879 NEUROD1Q13562 356 aa16.81■□□□□ 0.28
PTPRF-205ENST00000414879 TNIKQ9UKE5 1360 aa16.77■□□□□ 0.28
PTPRF-205ENST00000414879 MTUS2Q5JR59 1369 aa16.77■□□□□ 0.27
PTPRF-205ENST00000414879 ZNF777Q9ULD5 760 aaPredicted RBP16.76■□□□□ 0.27
PTPRF-205ENST00000414879 PEG3Q9GZU2 1588 aa16.74■□□□□ 0.27
PTPRF-205ENST00000414879 SLC4A1APQ9BWU0 796 aaKnown RBP16.73■□□□□ 0.27
PTPRF-205ENST00000414879 ERCC6Q03468 1493 aa16.72■□□□□ 0.27
PTPRF-205ENST00000414879 ANP32CO43423 234 aa16.72■□□□□ 0.27
PTPRF-205ENST00000414879 PDS5BQ9NTI5 1447 aa16.71■□□□□ 0.26
PTPRF-205ENST00000414879 ZNF316A6NFI3 1004 aaPredicted RBP16.71■□□□□ 0.26
PTPRF-205ENST00000414879 TSPY4P0CV99 314 aa16.7■□□□□ 0.26
PTPRF-205ENST00000414879 TSPY10P0CW01 314 aa16.7■□□□□ 0.26
PTPRF-205ENST00000414879 ESF1Q9H501 851 aaKnown RBP16.69■□□□□ 0.26
PTPRF-205ENST00000414879 ATAD2BQ9ULI0 1458 aa16.69■□□□□ 0.26
PTPRF-205ENST00000414879 CCDC88BA6NC98 1476 aa16.68■□□□□ 0.26
PTPRF-205ENST00000414879 CEP162Q5TB80 1403 aa16.68■□□□□ 0.26
PTPRF-205ENST00000414879 ARID3CA6NKF2 412 aa16.68■□□□□ 0.26
PTPRF-205ENST00000414879 TONSLQ96HA7 1378 aa16.65■□□□□ 0.26
PTPRF-205ENST00000414879 ZNF326Q5BKZ1 582 aaKnown RBP16.64■□□□□ 0.25
PTPRF-205ENST00000414879 PLEKHD1A6NEE1 506 aa16.63■□□□□ 0.25
PTPRF-205ENST00000414879 FHAD1B1AJZ9 1412 aa16.62■□□□□ 0.25
PTPRF-205ENST00000414879 DAXXQ9UER7 740 aaPredicted RBP16.59■□□□□ 0.25
PTPRF-205ENST00000414879 EIF4G1Q04637 1599 aaKnown RBP16.59■□□□□ 0.25
PTPRF-205ENST00000414879 HMGXB3Q12766 1538 aa16.58■□□□□ 0.24
PTPRF-205ENST00000414879 CARMIL1Q5VZK9 1371 aa16.55■□□□□ 0.24
PTPRF-205ENST00000414879 NCAPD3P42695 1498 aa16.55■□□□□ 0.24
PTPRF-205ENST00000414879 CUX2O14529 1486 aa16.54■□□□□ 0.24
PTPRF-205ENST00000414879 NEFMP07197 916 aa16.54■□□□□ 0.24
PTPRF-205ENST00000414879 CADPSQ9ULU8 1353 aa16.53■□□□□ 0.24
PTPRF-205ENST00000414879 MYT1Q01538 1121 aa16.5■□□□□ 0.23
PTPRF-205ENST00000414879 CNGB1Q14028 1251 aaPredicted RBP16.5■□□□□ 0.23
PTPRF-205ENST00000414879 ABCC8Q09428 1581 aa16.49■□□□□ 0.23
PTPRF-205ENST00000414879 BCANQ96GW7 911 aa16.49■□□□□ 0.23
PTPRF-205ENST00000414879 STAG3Q9UJ98 1225 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms