RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 NISCHQ9Y2I1 1504 aa30.18■■■□□ 2.42
PHRF1-201ENST00000264555 DCAF8L2P0C7V8 631 aa29.28■■■□□ 2.28
PHRF1-201ENST00000264555 SUPT5HO00267 1087 aaKnown RBP28.16■■■□□ 2.1
PHRF1-201ENST00000264555 SHROOM4Q9ULL8 1493 aa27.97■■■□□ 2.07
PHRF1-201ENST00000264555 EHMT2Q96KQ7 1210 aa26.67■■□□□ 1.86
PHRF1-201ENST00000264555 FAM9AQ8IZU1 332 aaPredicted RBP26.37■■□□□ 1.81
PHRF1-201ENST00000264555 TRIM41Q8WV44 630 aa26.22■■□□□ 1.79
PHRF1-201ENST00000264555 APLP2Q06481 763 aa26.19■■□□□ 1.78
PHRF1-201ENST00000264555 PCGF6Q9BYE7 350 aa26.17■■□□□ 1.78
PHRF1-201ENST00000264555 TTBK1Q5TCY1 1321 aaPredicted RBP25.78■■□□□ 1.72
PHRF1-201ENST00000264555 ZEB1P37275 1124 aaPredicted RBP25.72■■□□□ 1.71
PHRF1-201ENST00000264555 CHIC1Q5VXU3 224 aa25.68■■□□□ 1.7
PHRF1-201ENST00000264555 UBTFP17480 764 aaKnown RBP25.64■■□□□ 1.69
PHRF1-201ENST00000264555 RANGAP1P46060 587 aaPredicted RBP25.58■■□□□ 1.69
PHRF1-201ENST00000264555 CCER1Q8TC90 406 aaPredicted RBP25.5■■□□□ 1.67
PHRF1-201ENST00000264555 TRIM26Q12899 539 aaPredicted RBP25.39■■□□□ 1.66
PHRF1-201ENST00000264555 PELP1Q8IZL8 1130 aaKnown RBP25.37■■□□□ 1.65
PHRF1-201ENST00000264555 LOC105371045A0A1W2PR82 267 aa25.35■■□□□ 1.65
PHRF1-201ENST00000264555 ABCC9O60706 1549 aa25.33■■□□□ 1.65
PHRF1-201ENST00000264555 ATP1B4Q9UN42 357 aaPredicted RBP25.24■■□□□ 1.63
PHRF1-201ENST00000264555 PPARGC1BQ86YN6 1023 aaKnown RBP25.2■■□□□ 1.62
PHRF1-201ENST00000264555 HRCP23327 699 aa25.15■■□□□ 1.62
PHRF1-201ENST00000264555 ZCCHC6Q5VYS8 1495 aaKnown RBP25.12■■□□□ 1.61
PHRF1-201ENST00000264555 CENPBP07199 599 aaPredicted RBP25.12■■□□□ 1.61
PHRF1-201ENST00000264555 CCDC180Q9P1Z9 1646 aa24.99■■□□□ 1.59
PHRF1-201ENST00000264555 PABPN1Q86U42 306 aaKnown RBP eCLIP24.93■■□□□ 1.58
PHRF1-201ENST00000264555 HNRNPUL2Q1KMD3 747 aaKnown RBP24.65■■□□□ 1.54
PHRF1-201ENST00000264555 SCRIBQ14160 1630 aa24.63■■□□□ 1.53
PHRF1-201ENST00000264555 ITGAEP38570 1179 aa24.6■■□□□ 1.53
PHRF1-201ENST00000264555 YTHDC1Q96MU7 727 aaKnown RBP24.58■■□□□ 1.53
PHRF1-201ENST00000264555 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.48■■□□□ 1.51
PHRF1-201ENST00000264555 NEFLP07196 543 aa24.37■■□□□ 1.49
PHRF1-201ENST00000264555 CSRNP3Q8WYN3 585 aa24.34■■□□□ 1.49
PHRF1-201ENST00000264555 DIEXFQ68CQ4 756 aaKnown RBP24.2■■□□□ 1.46
PHRF1-201ENST00000264555 DCAF1Q9Y4B6 1507 aa24.17■■□□□ 1.46
PHRF1-201ENST00000264555 FAM50AQ14320 339 aaKnown RBP24.16■■□□□ 1.46
PHRF1-201ENST00000264555 ERICH6Q7L0X2 663 aa24.14■■□□□ 1.45
PHRF1-201ENST00000264555 RB1CC1Q8TDY2 1594 aa24.1■■□□□ 1.45
PHRF1-201ENST00000264555 RSF1Q96T23 1441 aaPredicted RBP24.1■■□□□ 1.45
PHRF1-201ENST00000264555 NACADO15069 1562 aa24.06■■□□□ 1.44
PHRF1-201ENST00000264555 MYT1LQ9UL68 1186 aa23.98■■□□□ 1.43
PHRF1-201ENST00000264555 POLR3GLQ9BT43 218 aa23.95■■□□□ 1.43
PHRF1-201ENST00000264555 MYO15BQ96JP2 1530 aa23.89■■□□□ 1.41
PHRF1-201ENST00000264555 TRIM52Q96A61 297 aa23.88■■□□□ 1.41
PHRF1-201ENST00000264555 NEUROD1Q13562 356 aa23.87■■□□□ 1.41
PHRF1-201ENST00000264555 ZNF316A6NFI3 1004 aaPredicted RBP23.83■■□□□ 1.41
PHRF1-201ENST00000264555 P3H3Q8IVL6 736 aa23.82■■□□□ 1.4
PHRF1-201ENST00000264555 MYT1Q01538 1121 aa23.81■■□□□ 1.4
PHRF1-201ENST00000264555 FBLN2P98095 1184 aa23.72■■□□□ 1.39
PHRF1-201ENST00000264555 EEA1Q15075 1411 aa23.68■■□□□ 1.38
PHRF1-201ENST00000264555 CNGB1Q14028 1251 aaPredicted RBP23.68■■□□□ 1.38
PHRF1-201ENST00000264555 BAZ1AQ9NRL2 1556 aaPredicted RBP23.64■■□□□ 1.37
PHRF1-201ENST00000264555 CECR2Q9BXF3 1484 aa23.59■■□□□ 1.37
PHRF1-201ENST00000264555 ANP32CO43423 234 aa23.57■■□□□ 1.36
PHRF1-201ENST00000264555 CLIP1P30622 1438 aa23.56■■□□□ 1.36
PHRF1-201ENST00000264555 WRNQ14191 1432 aaPredicted RBP eCLIP23.56■■□□□ 1.36
PHRF1-201ENST00000264555 BAZ1BQ9UIG0 1483 aaKnown RBP23.54■■□□□ 1.36
PHRF1-201ENST00000264555 GOLGA3Q08378 1498 aa23.53■■□□□ 1.36
PHRF1-201ENST00000264555 GTF3C3Q9Y5Q9 886 aa23.52■■□□□ 1.36
PHRF1-201ENST00000264555 CDK11AQ9UQ88 783 aaPredicted RBP23.52■■□□□ 1.36
PHRF1-201ENST00000264555 ARID3CA6NKF2 412 aa23.52■■□□□ 1.36
PHRF1-201ENST00000264555 CEP162Q5TB80 1403 aa23.5■■□□□ 1.35
PHRF1-201ENST00000264555 ZNF326Q5BKZ1 582 aaKnown RBP23.45■■□□□ 1.34
PHRF1-201ENST00000264555 TNIKQ9UKE5 1360 aa23.43■■□□□ 1.34
PHRF1-201ENST00000264555 ACIN1Q9UKV3 1341 aaKnown RBP23.42■■□□□ 1.34
PHRF1-201ENST00000264555 ZNF777Q9ULD5 760 aaPredicted RBP23.36■■□□□ 1.33
PHRF1-201ENST00000264555 SLC4A1APQ9BWU0 796 aaKnown RBP23.36■■□□□ 1.33
PHRF1-201ENST00000264555 MROH2BQ7Z745 1585 aa23.35■■□□□ 1.33
PHRF1-201ENST00000264555 CEP164Q9UPV0 1460 aa23.35■■□□□ 1.33
PHRF1-201ENST00000264555 DAXXQ9UER7 740 aaPredicted RBP23.32■■□□□ 1.32
PHRF1-201ENST00000264555 TONSLQ96HA7 1378 aa23.3■■□□□ 1.32
PHRF1-201ENST00000264555 KIF27Q86VH2 1401 aa23.29■■□□□ 1.32
PHRF1-201ENST00000264555 MTUS2Q5JR59 1369 aa23.24■■□□□ 1.31
PHRF1-201ENST00000264555 BCANQ96GW7 911 aa23.2■■□□□ 1.3
PHRF1-201ENST00000264555 CCDC88BA6NC98 1476 aa23.2■■□□□ 1.3
PHRF1-201ENST00000264555 SOGA1O94964 1423 aa23.15■■□□□ 1.3
PHRF1-201ENST00000264555 CHIC2Q9UKJ5 165 aa23.13■■□□□ 1.29
PHRF1-201ENST00000264555 DDX10Q13206 875 aaKnown RBP23.08■■□□□ 1.29
PHRF1-201ENST00000264555 CHMP7Q8WUX9 453 aaPredicted RBP23.08■■□□□ 1.29
PHRF1-201ENST00000264555 CLSPNQ9HAW4 1339 aa23.07■■□□□ 1.28
PHRF1-201ENST00000264555 TOP2AP11388 1531 aaKnown RBP23.04■■□□□ 1.28
PHRF1-201ENST00000264555 SMARCA2P51531 1590 aa23.04■■□□□ 1.28
PHRF1-201ENST00000264555 WIZO95785 1651 aa23.02■■□□□ 1.28
PHRF1-201ENST00000264555 ABCC8Q09428 1581 aa23.02■■□□□ 1.28
PHRF1-201ENST00000264555 TSPY4P0CV99 314 aa22.97■■□□□ 1.27
PHRF1-201ENST00000264555 TSPY10P0CW01 314 aa22.97■■□□□ 1.27
PHRF1-201ENST00000264555 MIER1Q8N108 512 aa22.95■■□□□ 1.26
PHRF1-201ENST00000264555 CARMIL1Q5VZK9 1371 aa22.91■■□□□ 1.26
PHRF1-201ENST00000264555 CUX2O14529 1486 aa22.9■■□□□ 1.26
PHRF1-201ENST00000264555 RRP7BPQ9NSQ0 103 aa22.9■■□□□ 1.26
PHRF1-201ENST00000264555 RTL5Q5HYW3 569 aaPredicted RBP22.87■■□□□ 1.25
PHRF1-201ENST00000264555 HNRNPUQ00839 825 aaKnown RBP eCLIP22.87■■□□□ 1.25
PHRF1-201ENST00000264555 FHAD1B1AJZ9 1412 aa22.86■■□□□ 1.25
PHRF1-201ENST00000264555 VPS8Q8N3P4 1428 aa22.86■■□□□ 1.25
PHRF1-201ENST00000264555 NPM1P06748 294 aaKnown RBP eCLIP22.86■■□□□ 1.25
PHRF1-201ENST00000264555 FKBP8Q14318 412 aa22.83■■□□□ 1.25
PHRF1-201ENST00000264555 PLEKHD1A6NEE1 506 aa22.82■■□□□ 1.24
PHRF1-201ENST00000264555 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.81■■□□□ 1.246e-8■■■□□ 15.2
PHRF1-201ENST00000264555 CCNB3Q8WWL7 1395 aa22.81■■□□□ 1.24
PHRF1-201ENST00000264555 SMARCA4P51532 1647 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms