RNA–Protein interactions for RNA: ENST00000531352.5

ACER3-210, Transcript of alkaline ceramidase 3, humanhuman

TSL 1 (best)

Gene ACER3, Length 2,093 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACER3-210ENST00000531352 NISCHQ9Y2I1 1504 aa28.2■■■□□ 2.1
ACER3-210ENST00000531352 CCDC180Q9P1Z9 1646 aa24.95■■□□□ 1.58
ACER3-210ENST00000531352 ABCC9O60706 1549 aa24.4■■□□□ 1.5
ACER3-210ENST00000531352 DCAF8L2P0C7V8 631 aa23.58■■□□□ 1.37
ACER3-210ENST00000531352 ZCCHC6Q5VYS8 1495 aaKnown RBP23.5■■□□□ 1.35
ACER3-210ENST00000531352 NACADO15069 1562 aa23.44■■□□□ 1.34
ACER3-210ENST00000531352 RB1CC1Q8TDY2 1594 aa23.44■■□□□ 1.34
ACER3-210ENST00000531352 MYO15BQ96JP2 1530 aa23.32■■□□□ 1.32
ACER3-210ENST00000531352 DCAF1Q9Y4B6 1507 aa23.28■■□□□ 1.32
ACER3-210ENST00000531352 UNC13AQ9UPW8 1703 aa23.02■■□□□ 1.28
ACER3-210ENST00000531352 PABPN1Q86U42 306 aaKnown RBP eCLIP22.87■■□□□ 1.25
ACER3-210ENST00000531352 SCRIBQ14160 1630 aa22.86■■□□□ 1.25
ACER3-210ENST00000531352 BICRAQ9NZM4 1560 aa22.82■■□□□ 1.24
ACER3-210ENST00000531352 SHROOM4Q9ULL8 1493 aa22.42■■□□□ 1.18
ACER3-210ENST00000531352 DNAJC5BQ9UF47 199 aa22.39■■□□□ 1.17
ACER3-210ENST00000531352 EIF4G1Q04637 1599 aaKnown RBP22.17■■□□□ 1.14
ACER3-210ENST00000531352 CC2D2AQ9P2K1 1620 aa22.06■■□□□ 1.12
ACER3-210ENST00000531352 CECR2Q9BXF3 1484 aa22.02■■□□□ 1.12
ACER3-210ENST00000531352 SMARCA4P51532 1647 aa21.85■■□□□ 1.09
ACER3-210ENST00000531352 BAZ1AQ9NRL2 1556 aaPredicted RBP21.81■■□□□ 1.08
ACER3-210ENST00000531352 MROH2BQ7Z745 1585 aa21.78■■□□□ 1.08
ACER3-210ENST00000531352 ATAD2BQ9ULI0 1458 aa21.71■■□□□ 1.07
ACER3-210ENST00000531352 NCAPD3P42695 1498 aa21.66■■□□□ 1.06
ACER3-210ENST00000531352 SMARCA2P51531 1590 aa21.64■■□□□ 1.05
ACER3-210ENST00000531352 PEG3Q9GZU2 1588 aa21.61■■□□□ 1.05
ACER3-210ENST00000531352 RSF1Q96T23 1441 aaPredicted RBP21.56■■□□□ 1.04
ACER3-210ENST00000531352 WIZO95785 1651 aa21.55■■□□□ 1.04
ACER3-210ENST00000531352 HMGXB3Q12766 1538 aa21.53■■□□□ 1.04
ACER3-210ENST00000531352 BAZ1BQ9UIG0 1483 aaKnown RBP21.52■■□□□ 1.03
ACER3-210ENST00000531352 TOP2AP11388 1531 aaKnown RBP21.26■□□□□ 0.99
ACER3-210ENST00000531352 NESP48681 1621 aa21.18■□□□□ 0.98
ACER3-210ENST00000531352 SUPT5HO00267 1087 aaKnown RBP21.14■□□□□ 0.98
ACER3-210ENST00000531352 CCDC88BA6NC98 1476 aa21.06■□□□□ 0.96
ACER3-210ENST00000531352 CADPSQ9ULU8 1353 aa21.05■□□□□ 0.96
ACER3-210ENST00000531352 LAMC3Q9Y6N6 1575 aa21.05■□□□□ 0.96
ACER3-210ENST00000531352 ERCC6Q03468 1493 aa20.96■□□□□ 0.95
ACER3-210ENST00000531352 CFTRP13569 1480 aa20.95■□□□□ 0.94
ACER3-210ENST00000531352 KIF21AQ7Z4S6 1674 aa20.91■□□□□ 0.94
ACER3-210ENST00000531352 PDS5BQ9NTI5 1447 aa20.9■□□□□ 0.94
ACER3-210ENST00000531352 FANCD2Q9BXW9 1451 aa20.8■□□□□ 0.92
ACER3-210ENST00000531352 THOC2Q8NI27 1593 aaKnown RBP20.77■□□□□ 0.92
ACER3-210ENST00000531352 PRDM2Q13029 1718 aa20.77■□□□□ 0.92
ACER3-210ENST00000531352 CEP164Q9UPV0 1460 aa20.75■□□□□ 0.91
ACER3-210ENST00000531352 MRC2Q9UBG0 1479 aa20.69■□□□□ 0.9
ACER3-210ENST00000531352 CUX2O14529 1486 aa20.67■□□□□ 0.9
ACER3-210ENST00000531352 WDR62O43379 1518 aa20.62■□□□□ 0.89
ACER3-210ENST00000531352 URB2Q14146 1524 aaKnown RBP20.62■□□□□ 0.89
ACER3-210ENST00000531352 TOPBP1Q92547 1522 aa20.49■□□□□ 0.87
ACER3-210ENST00000531352 DNMBPQ6XZF7 1577 aa20.45■□□□□ 0.86
ACER3-210ENST00000531352 ABCC8Q09428 1581 aa20.42■□□□□ 0.86
ACER3-210ENST00000531352 CUX1P39880 1505 aa20.41■□□□□ 0.86
ACER3-210ENST00000531352 POLA1P09884 1462 aaPredicted RBP20.34■□□□□ 0.85
ACER3-210ENST00000531352 FGD5Q6ZNL6 1462 aa20.3■□□□□ 0.84
ACER3-210ENST00000531352 IFT140Q96RY7 1462 aa20.29■□□□□ 0.84
ACER3-210ENST00000531352 WRNQ14191 1432 aaPredicted RBP eCLIP20.29■□□□□ 0.84
ACER3-210ENST00000531352 RAD54L2Q9Y4B4 1467 aa20.28■□□□□ 0.84
ACER3-210ENST00000531352 ZNF608Q9ULD9 1512 aaPredicted RBP20.28■□□□□ 0.84
ACER3-210ENST00000531352 TARBP1Q13395 1621 aaKnown RBP20.27■□□□□ 0.84
ACER3-210ENST00000531352 SYNJ1O43426 1573 aa20.27■□□□□ 0.84
ACER3-210ENST00000531352 SOGA1O94964 1423 aa20.25■□□□□ 0.83
ACER3-210ENST00000531352 TOP2BQ02880 1626 aa20.23■□□□□ 0.83
ACER3-210ENST00000531352 BIVM-ERCC5R4GMW8 1640 aa20.22■□□□□ 0.83
ACER3-210ENST00000531352 AQRO60306 1485 aaKnown RBP eCLIP20.18■□□□□ 0.822e-12■■■■■ 32.2
ACER3-210ENST00000531352 TDRD9Q8NDG6 1382 aaKnown RBP20.16■□□□□ 0.82
ACER3-210ENST00000531352 EIF4G3O43432 1585 aaKnown RBP20.16■□□□□ 0.82
ACER3-210ENST00000531352 WDR97A6NE52 1622 aa20.11■□□□□ 0.81
ACER3-210ENST00000531352 ABCA10Q8WWZ4 1543 aa20.09■□□□□ 0.81
ACER3-210ENST00000531352 GAPVD1Q14C86 1478 aa20.01■□□□□ 0.79
ACER3-210ENST00000531352 ABCA5Q8WWZ7 1642 aa20■□□□□ 0.79
ACER3-210ENST00000531352 DNAJC5Q9H3Z4 198 aa19.98■□□□□ 0.79
ACER3-210ENST00000531352 GRIN2BQ13224 1484 aa19.97■□□□□ 0.79
ACER3-210ENST00000531352 PBRM1Q86U86 1689 aa19.96■□□□□ 0.79
ACER3-210ENST00000531352 SNAPC4Q5SXM2 1469 aa19.95■□□□□ 0.78
ACER3-210ENST00000531352 TRIM41Q8WV44 630 aa19.91■□□□□ 0.78
ACER3-210ENST00000531352 FBLN2P98095 1184 aa19.9■□□□□ 0.78
ACER3-210ENST00000531352 CHD1O14646 1710 aa19.9■□□□□ 0.78
ACER3-210ENST00000531352 OSCARQ8IYS5 282 aa19.9■□□□□ 0.78
ACER3-210ENST00000531352 MAGI1Q96QZ7 1491 aaPredicted RBP19.89■□□□□ 0.77
ACER3-210ENST00000531352 KIF27Q86VH2 1401 aa19.84■□□□□ 0.77
ACER3-210ENST00000531352 CHMP7Q8WUX9 453 aaPredicted RBP19.83■□□□□ 0.77
ACER3-210ENST00000531352 ERICH3Q5RHP9 1530 aa19.83■□□□□ 0.76
ACER3-210ENST00000531352 SYNJ2O15056 1496 aa19.83■□□□□ 0.76
ACER3-210ENST00000531352 RUSC2Q8N2Y8 1516 aa19.81■□□□□ 0.76
ACER3-210ENST00000531352 CHIC1Q5VXU3 224 aa19.8■□□□□ 0.76
ACER3-210ENST00000531352 IGF1RP08069 1367 aa19.79■□□□□ 0.76
ACER3-210ENST00000531352 ADAMTS12P58397 1594 aa19.79■□□□□ 0.76
ACER3-210ENST00000531352 FHAD1B1AJZ9 1412 aa19.76■□□□□ 0.75
ACER3-210ENST00000531352 GRIN2AQ12879 1464 aa19.73■□□□□ 0.75
ACER3-210ENST00000531352 CARMIL1Q5VZK9 1371 aa19.66■□□□□ 0.74
ACER3-210ENST00000531352 CUL7Q14999 1698 aa19.66■□□□□ 0.74
ACER3-210ENST00000531352 CLASP1Q7Z460 1538 aa19.66■□□□□ 0.74
ACER3-210ENST00000531352 CEP170Q5SW79 1584 aa19.65■□□□□ 0.74
ACER3-210ENST00000531352 NUP160Q12769 1436 aa19.63■□□□□ 0.73
ACER3-210ENST00000531352 FAM9AQ8IZU1 332 aaPredicted RBP19.58■□□□□ 0.72
ACER3-210ENST00000531352 RIMBP3CA6NJZ7 1639 aa19.57■□□□□ 0.72
ACER3-210ENST00000531352 RIMBP3BA6NNM3 1639 aa19.57■□□□□ 0.72
ACER3-210ENST00000531352 RIMBP3Q9UFD9 1639 aa19.57■□□□□ 0.72
ACER3-210ENST00000531352 ARHGEF11O15085 1522 aa19.57■□□□□ 0.72
ACER3-210ENST00000531352 CSRNP3Q8WYN3 585 aa19.54■□□□□ 0.72
ACER3-210ENST00000531352 RAPGEF2Q9Y4G8 1499 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms