RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 NISCHQ9Y2I1 1504 aa20.84■□□□□ 0.93
PTPRF-204ENST00000412568 DCAF8L2P0C7V8 631 aa20.4■□□□□ 0.86
PTPRF-204ENST00000412568 SHROOM4Q9ULL8 1493 aa19.51■□□□□ 0.71
PTPRF-204ENST00000412568 SUPT5HO00267 1087 aaKnown RBP19.45■□□□□ 0.7
PTPRF-204ENST00000412568 EHMT2Q96KQ7 1210 aa18.65■□□□□ 0.58
PTPRF-204ENST00000412568 FAM9AQ8IZU1 332 aaPredicted RBP18.28■□□□□ 0.52
PTPRF-204ENST00000412568 TTBK1Q5TCY1 1321 aaPredicted RBP17.91■□□□□ 0.46
PTPRF-204ENST00000412568 TRIM41Q8WV44 630 aa17.89■□□□□ 0.45
PTPRF-204ENST00000412568 ABCC9O60706 1549 aa17.85■□□□□ 0.45
PTPRF-204ENST00000412568 PCGF6Q9BYE7 350 aa17.83■□□□□ 0.44
PTPRF-204ENST00000412568 RANGAP1P46060 587 aaPredicted RBP17.8■□□□□ 0.44
PTPRF-204ENST00000412568 CHIC1Q5VXU3 224 aa17.65■□□□□ 0.42
PTPRF-204ENST00000412568 PABPN1Q86U42 306 aaKnown RBP eCLIP17.63■□□□□ 0.41
PTPRF-204ENST00000412568 LOC105371045A0A1W2PR82 267 aa17.63■□□□□ 0.41
PTPRF-204ENST00000412568 PPARGC1BQ86YN6 1023 aaKnown RBP17.58■□□□□ 0.41
PTPRF-204ENST00000412568 APLP2Q06481 763 aa17.53■□□□□ 0.4
PTPRF-204ENST00000412568 UBTFP17480 764 aaKnown RBP17.51■□□□□ 0.39
PTPRF-204ENST00000412568 ATP1B4Q9UN42 357 aaPredicted RBP17.34■□□□□ 0.37
PTPRF-204ENST00000412568 ZCCHC6Q5VYS8 1495 aaKnown RBP17.31■□□□□ 0.36
PTPRF-204ENST00000412568 CCER1Q8TC90 406 aaPredicted RBP17.18■□□□□ 0.34
PTPRF-204ENST00000412568 SCRIBQ14160 1630 aa17.13■□□□□ 0.33
PTPRF-204ENST00000412568 HRCP23327 699 aa17.08■□□□□ 0.33
PTPRF-204ENST00000412568 TRIM26Q12899 539 aaPredicted RBP17.07■□□□□ 0.32
PTPRF-204ENST00000412568 CCDC180Q9P1Z9 1646 aa17.07■□□□□ 0.32
PTPRF-204ENST00000412568 ZEB1P37275 1124 aaPredicted RBP16.99■□□□□ 0.31
PTPRF-204ENST00000412568 ITGAEP38570 1179 aa16.95■□□□□ 0.3
PTPRF-204ENST00000412568 HNRNPUL2Q1KMD3 747 aaKnown RBP16.9■□□□□ 0.3
PTPRF-204ENST00000412568 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.79■□□□□ 0.28
PTPRF-204ENST00000412568 PELP1Q8IZL8 1130 aaKnown RBP16.73■□□□□ 0.27
PTPRF-204ENST00000412568 RSF1Q96T23 1441 aaPredicted RBP16.69■□□□□ 0.26
PTPRF-204ENST00000412568 CSRNP3Q8WYN3 585 aa16.67■□□□□ 0.26
PTPRF-204ENST00000412568 YTHDC1Q96MU7 727 aaKnown RBP16.64■□□□□ 0.25
PTPRF-204ENST00000412568 MYO15BQ96JP2 1530 aa16.63■□□□□ 0.25
PTPRF-204ENST00000412568 P3H3Q8IVL6 736 aa16.6■□□□□ 0.25
PTPRF-204ENST00000412568 CECR2Q9BXF3 1484 aa16.59■□□□□ 0.25
PTPRF-204ENST00000412568 CENPBP07199 599 aaPredicted RBP16.57■□□□□ 0.24
PTPRF-204ENST00000412568 RB1CC1Q8TDY2 1594 aa16.55■□□□□ 0.24
PTPRF-204ENST00000412568 FBLN2P98095 1184 aa16.52■□□□□ 0.23
PTPRF-204ENST00000412568 ARID3CA6NKF2 412 aa16.5■□□□□ 0.23
PTPRF-204ENST00000412568 FAM50AQ14320 339 aaKnown RBP16.5■□□□□ 0.23
PTPRF-204ENST00000412568 NACADO15069 1562 aa16.49■□□□□ 0.23
PTPRF-204ENST00000412568 DCAF1Q9Y4B6 1507 aa16.42■□□□□ 0.22
PTPRF-204ENST00000412568 MYT1LQ9UL68 1186 aa16.39■□□□□ 0.21
PTPRF-204ENST00000412568 CNGB1Q14028 1251 aaPredicted RBP16.38■□□□□ 0.21
PTPRF-204ENST00000412568 POLR3GLQ9BT43 218 aa16.33■□□□□ 0.2
PTPRF-204ENST00000412568 NEUROD1Q13562 356 aa16.31■□□□□ 0.2
PTPRF-204ENST00000412568 MROH2BQ7Z745 1585 aa16.3■□□□□ 0.2
PTPRF-204ENST00000412568 DIEXFQ68CQ4 756 aaKnown RBP16.27■□□□□ 0.2
PTPRF-204ENST00000412568 MYT1Q01538 1121 aa16.24■□□□□ 0.19
PTPRF-204ENST00000412568 TRIM52Q96A61 297 aa16.24■□□□□ 0.19
PTPRF-204ENST00000412568 BAZ1BQ9UIG0 1483 aaKnown RBP16.22■□□□□ 0.19
PTPRF-204ENST00000412568 BAZ1AQ9NRL2 1556 aaPredicted RBP16.2■□□□□ 0.18
PTPRF-204ENST00000412568 WRNQ14191 1432 aaPredicted RBP eCLIP16.17■□□□□ 0.18
PTPRF-204ENST00000412568 ERICH6Q7L0X2 663 aa16.16■□□□□ 0.18
PTPRF-204ENST00000412568 SOGA1O94964 1423 aa16.1■□□□□ 0.17
PTPRF-204ENST00000412568 ZNF777Q9ULD5 760 aaPredicted RBP16.1■□□□□ 0.17
PTPRF-204ENST00000412568 CCDC88BA6NC98 1476 aa16.08■□□□□ 0.16
PTPRF-204ENST00000412568 CLIP1P30622 1438 aa16.07■□□□□ 0.16
PTPRF-204ENST00000412568 ZNF326Q5BKZ1 582 aaKnown RBP16.06■□□□□ 0.16
PTPRF-204ENST00000412568 WIZO95785 1651 aa16.06■□□□□ 0.16
PTPRF-204ENST00000412568 CEP162Q5TB80 1403 aa16.06■□□□□ 0.16
PTPRF-204ENST00000412568 ABCC8Q09428 1581 aa16.05■□□□□ 0.16
PTPRF-204ENST00000412568 ZNF316A6NFI3 1004 aaPredicted RBP16.01■□□□□ 0.15
PTPRF-204ENST00000412568 CHIC2Q9UKJ5 165 aa16■□□□□ 0.15
PTPRF-204ENST00000412568 NEFLP07196 543 aa15.98■□□□□ 0.15
PTPRF-204ENST00000412568 GOLGA3Q08378 1498 aa15.94■□□□□ 0.14
PTPRF-204ENST00000412568 CHMP7Q8WUX9 453 aaPredicted RBP15.93■□□□□ 0.14
PTPRF-204ENST00000412568 TNIKQ9UKE5 1360 aa15.9■□□□□ 0.14
PTPRF-204ENST00000412568 GTF3C3Q9Y5Q9 886 aa15.9■□□□□ 0.14
PTPRF-204ENST00000412568 EEA1Q15075 1411 aa15.9■□□□□ 0.14
PTPRF-204ENST00000412568 KIF27Q86VH2 1401 aa15.89■□□□□ 0.13
PTPRF-204ENST00000412568 CDK11AQ9UQ88 783 aaPredicted RBP15.86■□□□□ 0.13
PTPRF-204ENST00000412568 SLC4A1APQ9BWU0 796 aaKnown RBP15.86■□□□□ 0.13
PTPRF-204ENST00000412568 MTUS2Q5JR59 1369 aa15.84■□□□□ 0.13
PTPRF-204ENST00000412568 HIRIP3Q9BW71 556 aaPredicted RBP15.83■□□□□ 0.12
PTPRF-204ENST00000412568 CEP164Q9UPV0 1460 aa15.83■□□□□ 0.12
PTPRF-204ENST00000412568 ACIN1Q9UKV3 1341 aaKnown RBP15.81■□□□□ 0.12
PTPRF-204ENST00000412568 CUX2O14529 1486 aa15.8■□□□□ 0.12
PTPRF-204ENST00000412568 ATAD2BQ9ULI0 1458 aa15.8■□□□□ 0.12
PTPRF-204ENST00000412568 RRP7BPQ9NSQ0 103 aa15.79■□□□□ 0.12
PTPRF-204ENST00000412568 RUSC2Q8N2Y8 1516 aa15.79■□□□□ 0.12
PTPRF-204ENST00000412568 TOP2AP11388 1531 aaKnown RBP15.78■□□□□ 0.12
PTPRF-204ENST00000412568 SMARCA4P51532 1647 aa15.75■□□□□ 0.11
PTPRF-204ENST00000412568 CARMIL1Q5VZK9 1371 aa15.75■□□□□ 0.11
PTPRF-204ENST00000412568 SMARCA2P51531 1590 aa15.75■□□□□ 0.11
PTPRF-204ENST00000412568 TDRD9Q8NDG6 1382 aaKnown RBP15.74■□□□□ 0.11
PTPRF-204ENST00000412568 KANK4Q5T7N3 995 aaPredicted RBP15.74■□□□□ 0.11
PTPRF-204ENST00000412568 BCANQ96GW7 911 aa15.74■□□□□ 0.11
PTPRF-204ENST00000412568 DDX10Q13206 875 aaKnown RBP15.73■□□□□ 0.11
PTPRF-204ENST00000412568 ANP32CO43423 234 aa15.73■□□□□ 0.11
PTPRF-204ENST00000412568 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.72■□□□□ 0.11
PTPRF-204ENST00000412568 KCNH8Q96L42 1107 aa15.72■□□□□ 0.11
PTPRF-204ENST00000412568 TONSLQ96HA7 1378 aa15.7■□□□□ 0.1
PTPRF-204ENST00000412568 ERCC6Q03468 1493 aa15.67■□□□□ 0.1
PTPRF-204ENST00000412568 CADPSQ9ULU8 1353 aa15.65■□□□□ 0.1
PTPRF-204ENST00000412568 MIER1Q8N108 512 aa15.64■□□□□ 0.09
PTPRF-204ENST00000412568 SIN3AQ96ST3 1273 aa15.63■□□□□ 0.09
PTPRF-204ENST00000412568 KDM2AQ9Y2K7 1162 aa15.62■□□□□ 0.09
PTPRF-204ENST00000412568 TSPY4P0CV99 314 aa15.62■□□□□ 0.09
PTPRF-204ENST00000412568 TSPY10P0CW01 314 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms