RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 NISCHQ9Y2I1 1504 aa28.58■■■□□ 2.17
VPS28-214ENST00000531032 CCDC180Q9P1Z9 1646 aa25.66■■□□□ 1.7
VPS28-214ENST00000531032 ABCC9O60706 1549 aa25.58■■□□□ 1.68
VPS28-214ENST00000531032 RB1CC1Q8TDY2 1594 aa24.39■■□□□ 1.5
VPS28-214ENST00000531032 NACADO15069 1562 aa24.24■■□□□ 1.47
VPS28-214ENST00000531032 DCAF8L2P0C7V8 631 aa23.99■■□□□ 1.43
VPS28-214ENST00000531032 DNAJC5BQ9UF47 199 aa23.96■■□□□ 1.43
VPS28-214ENST00000531032 MYO15BQ96JP2 1530 aa23.95■■□□□ 1.43
VPS28-214ENST00000531032 UNC13AQ9UPW8 1703 aa23.85■■□□□ 1.41
VPS28-214ENST00000531032 PABPN1Q86U42 306 aaKnown RBP eCLIP23.78■■□□□ 1.46e-9■□□□□ 9.8
VPS28-214ENST00000531032 ZCCHC6Q5VYS8 1495 aaKnown RBP23.71■■□□□ 1.39
VPS28-214ENST00000531032 BICRAQ9NZM4 1560 aa23.69■■□□□ 1.38
VPS28-214ENST00000531032 DCAF1Q9Y4B6 1507 aa23.64■■□□□ 1.38
VPS28-214ENST00000531032 SHROOM4Q9ULL8 1493 aa23.42■■□□□ 1.34
VPS28-214ENST00000531032 SCRIBQ14160 1630 aa23.34■■□□□ 1.33
VPS28-214ENST00000531032 CC2D2AQ9P2K1 1620 aa23.13■■□□□ 1.29
VPS28-214ENST00000531032 EIF4G1Q04637 1599 aaKnown RBP23.1■■□□□ 1.29
VPS28-214ENST00000531032 CECR2Q9BXF3 1484 aa23.05■■□□□ 1.28
VPS28-214ENST00000531032 NCAPD3P42695 1498 aa22.37■■□□□ 1.17
VPS28-214ENST00000531032 ATAD2BQ9ULI0 1458 aa22.3■■□□□ 1.16
VPS28-214ENST00000531032 SMARCA4P51532 1647 aa22.29■■□□□ 1.16
VPS28-214ENST00000531032 SMARCA2P51531 1590 aa22.25■■□□□ 1.15
VPS28-214ENST00000531032 HMGXB3Q12766 1538 aa22.23■■□□□ 1.15
VPS28-214ENST00000531032 BAZ1AQ9NRL2 1556 aaPredicted RBP22.19■■□□□ 1.14
VPS28-214ENST00000531032 PEG3Q9GZU2 1588 aa22.11■■□□□ 1.13
VPS28-214ENST00000531032 CUX2O14529 1486 aa22.08■■□□□ 1.12
VPS28-214ENST00000531032 ERCC6Q03468 1493 aa22.08■■□□□ 1.12
VPS28-214ENST00000531032 BAZ1BQ9UIG0 1483 aaKnown RBP22.08■■□□□ 1.12
VPS28-214ENST00000531032 MROH2BQ7Z745 1585 aa22.01■■□□□ 1.11
VPS28-214ENST00000531032 DNAJC5Q9H3Z4 198 aa22■■□□□ 1.11
VPS28-214ENST00000531032 NESP48681 1621 aa21.98■■□□□ 1.11
VPS28-214ENST00000531032 LAMC3Q9Y6N6 1575 aa21.87■■□□□ 1.09
VPS28-214ENST00000531032 THOC2Q8NI27 1593 aaKnown RBP21.8■■□□□ 1.08
VPS28-214ENST00000531032 WIZO95785 1651 aa21.74■■□□□ 1.07
VPS28-214ENST00000531032 KIF21AQ7Z4S6 1674 aa21.72■■□□□ 1.07
VPS28-214ENST00000531032 PDS5BQ9NTI5 1447 aa21.72■■□□□ 1.07
VPS28-214ENST00000531032 CADPSQ9ULU8 1353 aa21.67■■□□□ 1.06
VPS28-214ENST00000531032 RSF1Q96T23 1441 aaPredicted RBP21.55■■□□□ 1.04
VPS28-214ENST00000531032 MRC2Q9UBG0 1479 aa21.54■■□□□ 1.04
VPS28-214ENST00000531032 WDR62O43379 1518 aa21.51■■□□□ 1.03
VPS28-214ENST00000531032 TOP2AP11388 1531 aaKnown RBP21.5■■□□□ 1.03
VPS28-214ENST00000531032 CFTRP13569 1480 aa21.45■■□□□ 1.03
VPS28-214ENST00000531032 CEP164Q9UPV0 1460 aa21.45■■□□□ 1.03
VPS28-214ENST00000531032 FANCD2Q9BXW9 1451 aa21.43■■□□□ 1.02
VPS28-214ENST00000531032 PRDM2Q13029 1718 aa21.26■□□□□ 0.99
VPS28-214ENST00000531032 URB2Q14146 1524 aaKnown RBP21.26■□□□□ 0.99
VPS28-214ENST00000531032 CCDC88BA6NC98 1476 aa21.22■□□□□ 0.99
VPS28-214ENST00000531032 TOPBP1Q92547 1522 aa21.04■□□□□ 0.96
VPS28-214ENST00000531032 IFT140Q96RY7 1462 aa21.03■□□□□ 0.96
VPS28-214ENST00000531032 OSCARQ8IYS5 282 aa21.02■□□□□ 0.96
VPS28-214ENST00000531032 ABCC8Q09428 1581 aa21■□□□□ 0.95
VPS28-214ENST00000531032 ZNF608Q9ULD9 1512 aaPredicted RBP20.99■□□□□ 0.95
VPS28-214ENST00000531032 TRIM41Q8WV44 630 aa20.98■□□□□ 0.95
VPS28-214ENST00000531032 DNMBPQ6XZF7 1577 aa20.97■□□□□ 0.95
VPS28-214ENST00000531032 EIF4G3O43432 1585 aaKnown RBP20.89■□□□□ 0.94
VPS28-214ENST00000531032 TARBP1Q13395 1621 aaKnown RBP20.86■□□□□ 0.93
VPS28-214ENST00000531032 POLA1P09884 1462 aaPredicted RBP20.82■□□□□ 0.92
VPS28-214ENST00000531032 RIMBP3CA6NJZ7 1639 aa20.78■□□□□ 0.92
VPS28-214ENST00000531032 RIMBP3BA6NNM3 1639 aa20.78■□□□□ 0.92
VPS28-214ENST00000531032 RIMBP3Q9UFD9 1639 aa20.78■□□□□ 0.92
VPS28-214ENST00000531032 AQRO60306 1485 aaKnown RBP eCLIP20.78■□□□□ 0.927e-10■■■■□ 24.3
VPS28-214ENST00000531032 CHD1O14646 1710 aa20.73■□□□□ 0.91
VPS28-214ENST00000531032 RAD54L2Q9Y4B4 1467 aa20.72■□□□□ 0.91
VPS28-214ENST00000531032 ARHGEF11O15085 1522 aa20.72■□□□□ 0.91
VPS28-214ENST00000531032 SOGA1O94964 1423 aa20.7■□□□□ 0.9
VPS28-214ENST00000531032 FGD5Q6ZNL6 1462 aa20.69■□□□□ 0.9
VPS28-214ENST00000531032 CUX1P39880 1505 aa20.68■□□□□ 0.9
VPS28-214ENST00000531032 WDR97A6NE52 1622 aa20.67■□□□□ 0.9
VPS28-214ENST00000531032 TDRD9Q8NDG6 1382 aaKnown RBP20.65■□□□□ 0.9
VPS28-214ENST00000531032 SNAPC4Q5SXM2 1469 aa20.59■□□□□ 0.89
VPS28-214ENST00000531032 FBLN2P98095 1184 aa20.58■□□□□ 0.89
VPS28-214ENST00000531032 MAGI1Q96QZ7 1491 aaPredicted RBP20.56■□□□□ 0.88
VPS28-214ENST00000531032 SUPT5HO00267 1087 aaKnown RBP20.54■□□□□ 0.88
VPS28-214ENST00000531032 GRIN2BQ13224 1484 aa20.54■□□□□ 0.88
VPS28-214ENST00000531032 ARAP1Q96P48 1450 aa20.52■□□□□ 0.88
VPS28-214ENST00000531032 CLASP1Q7Z460 1538 aa20.51■□□□□ 0.87
VPS28-214ENST00000531032 CYB5RLQ6IPT4 315 aa20.5■□□□□ 0.87
VPS28-214ENST00000531032 SYNJ1O43426 1573 aa20.48■□□□□ 0.87
VPS28-214ENST00000531032 SYNJ2O15056 1496 aa20.48■□□□□ 0.87
VPS28-214ENST00000531032 PBRM1Q86U86 1689 aa20.48■□□□□ 0.87
VPS28-214ENST00000531032 ABCA10Q8WWZ4 1543 aa20.48■□□□□ 0.87
VPS28-214ENST00000531032 CHMP7Q8WUX9 453 aaPredicted RBP20.47■□□□□ 0.87
VPS28-214ENST00000531032 GAPVD1Q14C86 1478 aa20.46■□□□□ 0.87
VPS28-214ENST00000531032 ABCA5Q8WWZ7 1642 aa20.45■□□□□ 0.87
VPS28-214ENST00000531032 BIVM-ERCC5R4GMW8 1640 aa20.38■□□□□ 0.85
VPS28-214ENST00000531032 WRNQ14191 1432 aaPredicted RBP eCLIP20.37■□□□□ 0.85
VPS28-214ENST00000531032 TOP2BQ02880 1626 aa20.37■□□□□ 0.85
VPS28-214ENST00000531032 ADAMTS12P58397 1594 aa20.29■□□□□ 0.84
VPS28-214ENST00000531032 GRIN2AQ12879 1464 aa20.28■□□□□ 0.84
VPS28-214ENST00000531032 TRHP20396 242 aaPredicted RBP20.25■□□□□ 0.83
VPS28-214ENST00000531032 NUP160Q12769 1436 aa20.23■□□□□ 0.83
VPS28-214ENST00000531032 ERICH3Q5RHP9 1530 aa20.22■□□□□ 0.83
VPS28-214ENST00000531032 CEP170Q5SW79 1584 aa20.21■□□□□ 0.83
VPS28-214ENST00000531032 FHAD1B1AJZ9 1412 aa20.21■□□□□ 0.83
VPS28-214ENST00000531032 ERCC6L2Q5T890 1561 aa20.17■□□□□ 0.82
VPS28-214ENST00000531032 SHROOM2Q13796 1616 aa20.15■□□□□ 0.82
VPS28-214ENST00000531032 RUSC2Q8N2Y8 1516 aa20.01■□□□□ 0.79
VPS28-214ENST00000531032 PRG4Q92954 1404 aaPredicted RBP19.99■□□□□ 0.79
VPS28-214ENST00000531032 JPH4Q96JJ6 628 aa19.97■□□□□ 0.79
VPS28-214ENST00000531032 KIF27Q86VH2 1401 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms