Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.55■■□□□ 1.36
CUEDC1Q9NWM3 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CUEDC1Q9NWM3 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CUEDC1Q9NWM3 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC23.55■■□□□ 1.36
CUEDC1Q9NWM3 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC23.55■■□□□ 1.36
CUEDC1Q9NWM3 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CUEDC1Q9NWM3 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CUEDC1Q9NWM3 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
CUEDC1Q9NWM3 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC23.54■■□□□ 1.36
CUEDC1Q9NWM3 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CUEDC1Q9NWM3 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC23.54■■□□□ 1.36
CUEDC1Q9NWM3 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CUEDC1Q9NWM3 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CUEDC1Q9NWM3 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CUEDC1Q9NWM3 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
CUEDC1Q9NWM3 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC23.53■■□□□ 1.36
CUEDC1Q9NWM3 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CUEDC1Q9NWM3 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.53■■□□□ 1.36
CUEDC1Q9NWM3 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CUEDC1Q9NWM3 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CUEDC1Q9NWM3 REST-210ENST00000638187 1334 ntTSL 5 BASIC23.53■■□□□ 1.36
CUEDC1Q9NWM3 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC23.53■■□□□ 1.36
CUEDC1Q9NWM3 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
CUEDC1Q9NWM3 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
CUEDC1Q9NWM3 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC23.52■■□□□ 1.36
CUEDC1Q9NWM3 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.36
CUEDC1Q9NWM3 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC23.52■■□□□ 1.36
CUEDC1Q9NWM3 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
CUEDC1Q9NWM3 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CUEDC1Q9NWM3 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CUEDC1Q9NWM3 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC23.51■■□□□ 1.35
CUEDC1Q9NWM3 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC23.51■■□□□ 1.35
CUEDC1Q9NWM3 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
CUEDC1Q9NWM3 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CUEDC1Q9NWM3 PFN2-211ENST00000489155 636 ntTSL 4 BASIC23.51■■□□□ 1.35
CUEDC1Q9NWM3 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
CUEDC1Q9NWM3 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CUEDC1Q9NWM3 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC23.5■■□□□ 1.35
CUEDC1Q9NWM3 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC23.5■■□□□ 1.35
CUEDC1Q9NWM3 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
CUEDC1Q9NWM3 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
CUEDC1Q9NWM3 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC23.5■■□□□ 1.35
CUEDC1Q9NWM3 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.5■■□□□ 1.35
CUEDC1Q9NWM3 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC23.49■■□□□ 1.35
CUEDC1Q9NWM3 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.49■■□□□ 1.35
CUEDC1Q9NWM3 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC23.49■■□□□ 1.35
CUEDC1Q9NWM3 AC007029.1-201ENST00000604183 313 ntBASIC23.49■■□□□ 1.35
CUEDC1Q9NWM3 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CUEDC1Q9NWM3 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC23.49■■□□□ 1.35
CUEDC1Q9NWM3 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CUEDC1Q9NWM3 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CUEDC1Q9NWM3 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CUEDC1Q9NWM3 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC23.48■■□□□ 1.35
CUEDC1Q9NWM3 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CUEDC1Q9NWM3 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC23.48■■□□□ 1.35
CUEDC1Q9NWM3 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CUEDC1Q9NWM3 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
CUEDC1Q9NWM3 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CUEDC1Q9NWM3 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
CUEDC1Q9NWM3 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
CUEDC1Q9NWM3 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CUEDC1Q9NWM3 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CUEDC1Q9NWM3 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC23.47■■□□□ 1.35
CUEDC1Q9NWM3 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
CUEDC1Q9NWM3 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CUEDC1Q9NWM3 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
CUEDC1Q9NWM3 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
CUEDC1Q9NWM3 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC23.46■■□□□ 1.35
CUEDC1Q9NWM3 MIR3960-201ENST00000583311 91 ntBASIC23.46■■□□□ 1.35
CUEDC1Q9NWM3 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.45■■□□□ 1.35
CUEDC1Q9NWM3 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
CUEDC1Q9NWM3 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
CUEDC1Q9NWM3 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC23.45■■□□□ 1.34
CUEDC1Q9NWM3 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
CUEDC1Q9NWM3 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC23.45■■□□□ 1.34
CUEDC1Q9NWM3 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC23.44■■□□□ 1.34
CUEDC1Q9NWM3 RP9P-202ENST00000450133 1212 ntBASIC23.44■■□□□ 1.34
CUEDC1Q9NWM3 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
CUEDC1Q9NWM3 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC23.44■■□□□ 1.34
CUEDC1Q9NWM3 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
CUEDC1Q9NWM3 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
CUEDC1Q9NWM3 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC23.43■■□□□ 1.34
CUEDC1Q9NWM3 AC093536.1-201ENST00000569153 554 ntBASIC23.43■■□□□ 1.34
CUEDC1Q9NWM3 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
CUEDC1Q9NWM3 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
CUEDC1Q9NWM3 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.42■■□□□ 1.34
CUEDC1Q9NWM3 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC23.42■■□□□ 1.34
CUEDC1Q9NWM3 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
CUEDC1Q9NWM3 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC23.41■■□□□ 1.34
CUEDC1Q9NWM3 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
CUEDC1Q9NWM3 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CUEDC1Q9NWM3 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CUEDC1Q9NWM3 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
CUEDC1Q9NWM3 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC23.4■■□□□ 1.34
CUEDC1Q9NWM3 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.4■■□□□ 1.34
CUEDC1Q9NWM3 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
CUEDC1Q9NWM3 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC23.39■■□□□ 1.34
CUEDC1Q9NWM3 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.39■■□□□ 1.34
CUEDC1Q9NWM3 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
CUEDC1Q9NWM3 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms