Protein–RNA interactions for Protein: Q96A99

PTX4, Pentraxin-4, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTX4Q96A99 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PTX4Q96A99 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.75■□□□□ 0.91
PTX4Q96A99 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PTX4Q96A99 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
PTX4Q96A99 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PTX4Q96A99 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PTX4Q96A99 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
PTX4Q96A99 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PTX4Q96A99 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PTX4Q96A99 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PTX4Q96A99 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
PTX4Q96A99 AL162393.1-201ENST00000437852 946 ntBASIC20.73■□□□□ 0.91
PTX4Q96A99 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC20.73■□□□□ 0.91
PTX4Q96A99 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PTX4Q96A99 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PTX4Q96A99 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PTX4Q96A99 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PTX4Q96A99 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC20.72■□□□□ 0.91
PTX4Q96A99 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PTX4Q96A99 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC20.72■□□□□ 0.91
PTX4Q96A99 AC044849.2-201ENST00000606596 710 ntBASIC20.72■□□□□ 0.91
PTX4Q96A99 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PTX4Q96A99 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PTX4Q96A99 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC20.71■□□□□ 0.91
PTX4Q96A99 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.71■□□□□ 0.91
PTX4Q96A99 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC20.71■□□□□ 0.91
PTX4Q96A99 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTX4Q96A99 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTX4Q96A99 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTX4Q96A99 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTX4Q96A99 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.71■□□□□ 0.91
PTX4Q96A99 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTX4Q96A99 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTX4Q96A99 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTX4Q96A99 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTX4Q96A99 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC20.7■□□□□ 0.9
PTX4Q96A99 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC20.7■□□□□ 0.9
PTX4Q96A99 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTX4Q96A99 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC20.7■□□□□ 0.9
PTX4Q96A99 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC20.7■□□□□ 0.9
PTX4Q96A99 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTX4Q96A99 AC096887.2-201ENST00000623443 1957 ntBASIC20.7■□□□□ 0.9
PTX4Q96A99 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTX4Q96A99 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
PTX4Q96A99 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTX4Q96A99 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
PTX4Q96A99 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTX4Q96A99 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC20.69■□□□□ 0.9
PTX4Q96A99 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC20.69■□□□□ 0.9
PTX4Q96A99 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC20.69■□□□□ 0.9
PTX4Q96A99 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PTX4Q96A99 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.69■□□□□ 0.9
PTX4Q96A99 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTX4Q96A99 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTX4Q96A99 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC20.69■□□□□ 0.9
PTX4Q96A99 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTX4Q96A99 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTX4Q96A99 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC20.68■□□□□ 0.9
PTX4Q96A99 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTX4Q96A99 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC20.68■□□□□ 0.9
PTX4Q96A99 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC20.68■□□□□ 0.9
PTX4Q96A99 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTX4Q96A99 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTX4Q96A99 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC20.68■□□□□ 0.9
PTX4Q96A99 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTX4Q96A99 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
PTX4Q96A99 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTX4Q96A99 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTX4Q96A99 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
PTX4Q96A99 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTX4Q96A99 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTX4Q96A99 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC20.66■□□□□ 0.9
PTX4Q96A99 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTX4Q96A99 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTX4Q96A99 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTX4Q96A99 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PTX4Q96A99 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTX4Q96A99 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PTX4Q96A99 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PTX4Q96A99 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTX4Q96A99 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
PTX4Q96A99 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
PTX4Q96A99 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTX4Q96A99 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
PTX4Q96A99 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTX4Q96A99 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
PTX4Q96A99 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC20.64■□□□□ 0.9
PTX4Q96A99 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PTX4Q96A99 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PTX4Q96A99 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
PTX4Q96A99 BOD1-206ENST00000480951 814 ntTSL 2 BASIC20.64■□□□□ 0.89
PTX4Q96A99 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC20.64■□□□□ 0.89
PTX4Q96A99 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
PTX4Q96A99 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC20.64■□□□□ 0.89
PTX4Q96A99 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PTX4Q96A99 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTX4Q96A99 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC20.63■□□□□ 0.89
PTX4Q96A99 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTX4Q96A99 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTX4Q96A99 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms