RNA–Protein interactions for RNA: ENST00000344586.8

NKX2-3-201, Transcript of NK2 homeobox 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene NKX2-3, Length 2,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3-201ENST00000344586 NISCHQ9Y2I1 1504 aa47.52■■■■■ 5.2
NKX2-3-201ENST00000344586 SHROOM4Q9ULL8 1493 aa40.55■■■■■ 4.08
NKX2-3-201ENST00000344586 CCDC180Q9P1Z9 1646 aa40.36■■■■■ 4.05
NKX2-3-201ENST00000344586 ZCCHC6Q5VYS8 1495 aaKnown RBP40.3■■■■■ 4.04
NKX2-3-201ENST00000344586 SUPT5HO00267 1087 aaKnown RBP39.84■■■■□ 3.97
NKX2-3-201ENST00000344586 DCAF1Q9Y4B6 1507 aa39.05■■■■□ 3.84
NKX2-3-201ENST00000344586 DCAF8L2P0C7V8 631 aa39.01■■■■□ 3.84
NKX2-3-201ENST00000344586 MYO15BQ96JP2 1530 aa39■■■■□ 3.83
NKX2-3-201ENST00000344586 CHIC1Q5VXU3 224 aa38.96■■■■□ 3.83
NKX2-3-201ENST00000344586 HRCP23327 699 aa38.26■■■■□ 3.71
NKX2-3-201ENST00000344586 ABCC9O60706 1549 aa38.12■■■■□ 3.69
NKX2-3-201ENST00000344586 PCGF6Q9BYE7 350 aa37.96■■■■□ 3.67
NKX2-3-201ENST00000344586 SCRIBQ14160 1630 aa37.79■■■■□ 3.64
NKX2-3-201ENST00000344586 LOC105371045A0A1W2PR82 267 aa37.75■■■■□ 3.63
NKX2-3-201ENST00000344586 RSF1Q96T23 1441 aaPredicted RBP37.68■■■■□ 3.62
NKX2-3-201ENST00000344586 RB1CC1Q8TDY2 1594 aa37.39■■■■□ 3.58
NKX2-3-201ENST00000344586 PPARGC1BQ86YN6 1023 aaKnown RBP37.35■■■■□ 3.57
NKX2-3-201ENST00000344586 TRIM26Q12899 539 aaPredicted RBP37.24■■■■□ 3.55
NKX2-3-201ENST00000344586 NACADO15069 1562 aa37.19■■■■□ 3.54
NKX2-3-201ENST00000344586 TRIM41Q8WV44 630 aa37.12■■■■□ 3.53
NKX2-3-201ENST00000344586 CECR2Q9BXF3 1484 aa37.01■■■■□ 3.52
NKX2-3-201ENST00000344586 MROH2BQ7Z745 1585 aa36.95■■■■□ 3.51
NKX2-3-201ENST00000344586 WIZO95785 1651 aa36.78■■■■□ 3.48
NKX2-3-201ENST00000344586 FAM9AQ8IZU1 332 aaPredicted RBP36.78■■■■□ 3.48
NKX2-3-201ENST00000344586 BAZ1AQ9NRL2 1556 aaPredicted RBP36.63■■■■□ 3.46
NKX2-3-201ENST00000344586 ZEB1P37275 1124 aaPredicted RBP36.55■■■■□ 3.44
NKX2-3-201ENST00000344586 EIF4G1Q04637 1599 aaKnown RBP36.54■■■■□ 3.44
NKX2-3-201ENST00000344586 EHMT2Q96KQ7 1210 aa36.41■■■■□ 3.42
NKX2-3-201ENST00000344586 TOP2AP11388 1531 aaKnown RBP36.24■■■■□ 3.39
NKX2-3-201ENST00000344586 SMARCA4P51532 1647 aa36.16■■■■□ 3.38
NKX2-3-201ENST00000344586 SMARCA2P51531 1590 aa36.05■■■■□ 3.36
NKX2-3-201ENST00000344586 UNC13AQ9UPW8 1703 aa36.04■■■■□ 3.36
NKX2-3-201ENST00000344586 CCDC88BA6NC98 1476 aa36.03■■■■□ 3.36
NKX2-3-201ENST00000344586 ABCC8Q09428 1581 aa36.03■■■■□ 3.36
NKX2-3-201ENST00000344586 WRNQ14191 1432 aaPredicted RBP eCLIP35.8■■■■□ 3.32
NKX2-3-201ENST00000344586 SOGA1O94964 1423 aa35.71■■■■□ 3.31
NKX2-3-201ENST00000344586 CEP162Q5TB80 1403 aa35.71■■■■□ 3.31
NKX2-3-201ENST00000344586 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.65■■■■□ 3.3
NKX2-3-201ENST00000344586 EEA1Q15075 1411 aa35.63■■■■□ 3.29
NKX2-3-201ENST00000344586 TNIKQ9UKE5 1360 aa35.62■■■■□ 3.29
NKX2-3-201ENST00000344586 CCER1Q8TC90 406 aaPredicted RBP35.56■■■■□ 3.28
NKX2-3-201ENST00000344586 BICRAQ9NZM4 1560 aa35.56■■■■□ 3.28
NKX2-3-201ENST00000344586 RUSC2Q8N2Y8 1516 aa35.53■■■■□ 3.28
NKX2-3-201ENST00000344586 PEG3Q9GZU2 1588 aa35.5■■■■□ 3.27
NKX2-3-201ENST00000344586 CSRNP3Q8WYN3 585 aa35.47■■■■□ 3.27
NKX2-3-201ENST00000344586 SCAF1Q9H7N4 1312 aaKnown RBP35.41■■■■□ 3.26
NKX2-3-201ENST00000344586 GOLGA3Q08378 1498 aa35.4■■■■□ 3.26
NKX2-3-201ENST00000344586 PABPN1Q86U42 306 aaKnown RBP eCLIP35.34■■■■□ 3.25
NKX2-3-201ENST00000344586 TTBK1Q5TCY1 1321 aaPredicted RBP35.34■■■■□ 3.25
NKX2-3-201ENST00000344586 UBTFP17480 764 aaKnown RBP35.29■■■■□ 3.24
NKX2-3-201ENST00000344586 SYNJ1O43426 1573 aa35.26■■■■□ 3.24
NKX2-3-201ENST00000344586 KIF21BO75037 1637 aa35.2■■■■□ 3.23
NKX2-3-201ENST00000344586 CEP164Q9UPV0 1460 aa35.17■■■■□ 3.22
NKX2-3-201ENST00000344586 ATAD2BQ9ULI0 1458 aa35.12■■■■□ 3.21
NKX2-3-201ENST00000344586 DIEXFQ68CQ4 756 aaKnown RBP35.05■■■■□ 3.2
NKX2-3-201ENST00000344586 BAZ1BQ9UIG0 1483 aaKnown RBP35.02■■■■□ 3.2
NKX2-3-201ENST00000344586 ACIN1Q9UKV3 1341 aaKnown RBP34.97■■■■□ 3.19
NKX2-3-201ENST00000344586 CLIP1P30622 1438 aa34.96■■■■□ 3.19
NKX2-3-201ENST00000344586 PELP1Q8IZL8 1130 aaKnown RBP34.96■■■■□ 3.19
NKX2-3-201ENST00000344586 VPS8Q8N3P4 1428 aa34.88■■■■□ 3.17
NKX2-3-201ENST00000344586 NEUROD1Q13562 356 aa34.88■■■■□ 3.17
NKX2-3-201ENST00000344586 RAPGEF2Q9Y4G8 1499 aa34.85■■■■□ 3.17
NKX2-3-201ENST00000344586 TOP2BQ02880 1626 aa34.81■■■■□ 3.16
NKX2-3-201ENST00000344586 ZNF316A6NFI3 1004 aaPredicted RBP34.74■■■■□ 3.15
NKX2-3-201ENST00000344586 BIVM-ERCC5R4GMW8 1640 aa34.72■■■■□ 3.15
NKX2-3-201ENST00000344586 CENPBP07199 599 aaPredicted RBP34.69■■■■□ 3.14
NKX2-3-201ENST00000344586 HNRNPUL2Q1KMD3 747 aaKnown RBP34.68■■■■□ 3.14
NKX2-3-201ENST00000344586 ERICH3Q5RHP9 1530 aa34.57■■■■□ 3.13
NKX2-3-201ENST00000344586 APLP2Q06481 763 aa34.54■■■■□ 3.12
NKX2-3-201ENST00000344586 GTF3C3Q9Y5Q9 886 aa34.53■■■■□ 3.12
NKX2-3-201ENST00000344586 PRXQ9BXM0 1461 aa34.52■■■■□ 3.12
NKX2-3-201ENST00000344586 HMGXB3Q12766 1538 aa34.47■■■■□ 3.11
NKX2-3-201ENST00000344586 RANGAP1P46060 587 aaPredicted RBP34.45■■■■□ 3.11
NKX2-3-201ENST00000344586 ARAP1Q96P48 1450 aa34.44■■■■□ 3.1
NKX2-3-201ENST00000344586 CUX1P39880 1505 aa34.4■■■■□ 3.1
NKX2-3-201ENST00000344586 NCAPD3P42695 1498 aa34.39■■■■□ 3.1
NKX2-3-201ENST00000344586 MIER1Q8N108 512 aa34.26■■■■□ 3.08
NKX2-3-201ENST00000344586 KIF27Q86VH2 1401 aa34.23■■■■□ 3.07
NKX2-3-201ENST00000344586 CFTRP13569 1480 aa34.21■■■■□ 3.07
NKX2-3-201ENST00000344586 DHX57Q6P158 1386 aaKnown RBP34.19■■■■□ 3.06
NKX2-3-201ENST00000344586 CLSPNQ9HAW4 1339 aa34.18■■■■□ 3.06
NKX2-3-201ENST00000344586 YTHDC1Q96MU7 727 aaKnown RBP34.18■■■■□ 3.06
NKX2-3-201ENST00000344586 KANK4Q5T7N3 995 aaPredicted RBP34.16■■■■□ 3.06
NKX2-3-201ENST00000344586 RRBP1Q9P2E9 1410 aaKnown RBP34.14■■■■□ 3.06
NKX2-3-201ENST00000344586 ARHGAP35Q9NRY4 1499 aa34.07■■■■□ 3.05
NKX2-3-201ENST00000344586 PRDM2Q13029 1718 aa34.04■■■■□ 3.04
NKX2-3-201ENST00000344586 CUX2O14529 1486 aa34.02■■■■□ 3.04
NKX2-3-201ENST00000344586 CCNB3Q8WWL7 1395 aa33.91■■■■□ 3.02
NKX2-3-201ENST00000344586 IGF1RP08069 1367 aa33.83■■■■□ 3.01
NKX2-3-201ENST00000344586 TIAM1Q13009 1591 aa33.78■■■■□ 3
NKX2-3-201ENST00000344586 MAP3K1Q13233 1512 aa33.78■■■■□ 3
NKX2-3-201ENST00000344586 FGD5Q6ZNL6 1462 aa33.71■■■□□ 2.99
NKX2-3-201ENST00000344586 CADPSQ9ULU8 1353 aa33.71■■■□□ 2.99
NKX2-3-201ENST00000344586 CARMIL1Q5VZK9 1371 aa33.67■■■□□ 2.98
NKX2-3-201ENST00000344586 MAPKBP1O60336 1514 aa33.63■■■□□ 2.97
NKX2-3-201ENST00000344586 RAB3GAP2Q9H2M9 1393 aa33.63■■■□□ 2.97
NKX2-3-201ENST00000344586 LRRC9Q6ZRR7 1453 aa33.62■■■□□ 2.97
NKX2-3-201ENST00000344586 ITGAEP38570 1179 aa33.62■■■□□ 2.97
NKX2-3-201ENST00000344586 CFAP43Q8NDM7 1665 aa33.57■■■□□ 2.97
NKX2-3-201ENST00000344586 PCF11O94913 1555 aaKnown RBP33.52■■■□□ 2.96
Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms