Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB3O15347 AC018358.1-201ENST00000631079 1402 ntBASIC19.52■□□□□ 0.72
HMGB3O15347 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HMGB3O15347 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC19.52■□□□□ 0.72
HMGB3O15347 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC19.52■□□□□ 0.72
HMGB3O15347 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HMGB3O15347 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HMGB3O15347 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HMGB3O15347 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HMGB3O15347 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
HMGB3O15347 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
HMGB3O15347 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
HMGB3O15347 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
HMGB3O15347 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGB3O15347 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
HMGB3O15347 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGB3O15347 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC19.51■□□□□ 0.71
HMGB3O15347 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC19.51■□□□□ 0.71
HMGB3O15347 CEBPA-AS1-201ENST00000592982 2198 ntBASIC19.51■□□□□ 0.71
HMGB3O15347 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
HMGB3O15347 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGB3O15347 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HMGB3O15347 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC19.49■□□□□ 0.71
HMGB3O15347 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB3O15347 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB3O15347 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB3O15347 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB3O15347 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGB3O15347 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGB3O15347 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGB3O15347 LTK-203ENST00000453182 2412 ntTSL 2 BASIC19.48■□□□□ 0.71
HMGB3O15347 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
HMGB3O15347 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC19.48■□□□□ 0.71
HMGB3O15347 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGB3O15347 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB3O15347 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB3O15347 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC19.47■□□□□ 0.71
HMGB3O15347 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB3O15347 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB3O15347 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC19.46■□□□□ 0.71
HMGB3O15347 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC19.46■□□□□ 0.71
HMGB3O15347 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB3O15347 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC19.46■□□□□ 0.71
HMGB3O15347 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC19.46■□□□□ 0.71
HMGB3O15347 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
HMGB3O15347 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB3O15347 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB3O15347 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
HMGB3O15347 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB3O15347 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB3O15347 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB3O15347 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
HMGB3O15347 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
HMGB3O15347 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB3O15347 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
HMGB3O15347 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB3O15347 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB3O15347 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB3O15347 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB3O15347 THRA-202ENST00000394121 2260 ntTSL 2 BASIC19.44■□□□□ 0.7
HMGB3O15347 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HMGB3O15347 AP004609.3-201ENST00000610705 1884 ntBASIC19.44■□□□□ 0.7
HMGB3O15347 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
HMGB3O15347 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HMGB3O15347 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
HMGB3O15347 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB3O15347 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB3O15347 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB3O15347 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB3O15347 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC19.43■□□□□ 0.7
HMGB3O15347 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB3O15347 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB3O15347 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGB3O15347 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC19.43■□□□□ 0.7
HMGB3O15347 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
HMGB3O15347 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGB3O15347 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGB3O15347 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
HMGB3O15347 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HMGB3O15347 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGB3O15347 MEST-211ENST00000437945 1455 ntTSL 5 BASIC19.41■□□□□ 0.7
HMGB3O15347 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
HMGB3O15347 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC19.41■□□□□ 0.7
HMGB3O15347 PKD1P6-201ENST00000343738 4769 ntBASIC19.4■□□□□ 0.7
HMGB3O15347 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HMGB3O15347 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC19.4■□□□□ 0.7
HMGB3O15347 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HMGB3O15347 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC19.4■□□□□ 0.7
HMGB3O15347 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGB3O15347 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
HMGB3O15347 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HMGB3O15347 DENR-202ENST00000455982 1052 ntTSL 5 BASIC19.39■□□□□ 0.69
HMGB3O15347 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HMGB3O15347 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC19.39■□□□□ 0.69
HMGB3O15347 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HMGB3O15347 ERN1-208ENST00000606895 2068 ntBASIC19.39■□□□□ 0.69
HMGB3O15347 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HMGB3O15347 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB3O15347 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB3O15347 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms