Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC27.29■■□□□ 1.96
CCDC65Q8IXS2 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
CCDC65Q8IXS2 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC27.29■■□□□ 1.96
CCDC65Q8IXS2 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC27.29■■□□□ 1.96
CCDC65Q8IXS2 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
CCDC65Q8IXS2 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CCDC65Q8IXS2 CREM-210ENST00000374721 2020 ntTSL 5 BASIC27.28■■□□□ 1.96
CCDC65Q8IXS2 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC27.28■■□□□ 1.96
CCDC65Q8IXS2 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC27.27■■□□□ 1.96
CCDC65Q8IXS2 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC27.27■■□□□ 1.96
CCDC65Q8IXS2 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC27.27■■□□□ 1.96
CCDC65Q8IXS2 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC27.27■■□□□ 1.96
CCDC65Q8IXS2 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC27.26■■□□□ 1.95
CCDC65Q8IXS2 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.95
CCDC65Q8IXS2 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
CCDC65Q8IXS2 TPT1-202ENST00000379055 948 ntTSL 2 BASIC27.25■■□□□ 1.95
CCDC65Q8IXS2 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
CCDC65Q8IXS2 MIR4449-201ENST00000578365 66 ntBASIC27.24■■□□□ 1.95
CCDC65Q8IXS2 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC27.24■■□□□ 1.95
CCDC65Q8IXS2 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
CCDC65Q8IXS2 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC27.23■■□□□ 1.95
CCDC65Q8IXS2 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC27.23■■□□□ 1.95
CCDC65Q8IXS2 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC27.23■■□□□ 1.95
CCDC65Q8IXS2 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC27.23■■□□□ 1.95
CCDC65Q8IXS2 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC27.23■■□□□ 1.95
CCDC65Q8IXS2 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
CCDC65Q8IXS2 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC27.22■■□□□ 1.95
CCDC65Q8IXS2 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC27.22■■□□□ 1.95
CCDC65Q8IXS2 AL359504.2-201ENST00000605506 1601 ntBASIC27.22■■□□□ 1.95
CCDC65Q8IXS2 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC27.22■■□□□ 1.95
CCDC65Q8IXS2 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC27.22■■□□□ 1.95
CCDC65Q8IXS2 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CCDC65Q8IXS2 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC27.21■■□□□ 1.95
CCDC65Q8IXS2 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CCDC65Q8IXS2 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC27.21■■□□□ 1.95
CCDC65Q8IXS2 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CCDC65Q8IXS2 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC27.21■■□□□ 1.95
CCDC65Q8IXS2 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC27.21■■□□□ 1.95
CCDC65Q8IXS2 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC27.21■■□□□ 1.95
CCDC65Q8IXS2 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
CCDC65Q8IXS2 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC27.2■■□□□ 1.94
CCDC65Q8IXS2 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
CCDC65Q8IXS2 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC27.2■■□□□ 1.94
CCDC65Q8IXS2 SRP68-213ENST00000629930 165 ntTSL 5 BASIC27.2■■□□□ 1.94
CCDC65Q8IXS2 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
CCDC65Q8IXS2 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
CCDC65Q8IXS2 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC27.2■■□□□ 1.94
CCDC65Q8IXS2 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CCDC65Q8IXS2 AC060814.1-201ENST00000554326 538 ntBASIC27.19■■□□□ 1.94
CCDC65Q8IXS2 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CCDC65Q8IXS2 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC27.19■■□□□ 1.94
CCDC65Q8IXS2 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
CCDC65Q8IXS2 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC27.18■■□□□ 1.94
CCDC65Q8IXS2 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
CCDC65Q8IXS2 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC27.17■■□□□ 1.94
CCDC65Q8IXS2 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CCDC65Q8IXS2 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC27.17■■□□□ 1.94
CCDC65Q8IXS2 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
CCDC65Q8IXS2 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
CCDC65Q8IXS2 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CCDC65Q8IXS2 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC27.16■■□□□ 1.94
CCDC65Q8IXS2 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC27.16■■□□□ 1.94
CCDC65Q8IXS2 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC27.16■■□□□ 1.94
CCDC65Q8IXS2 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
CCDC65Q8IXS2 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
CCDC65Q8IXS2 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
CCDC65Q8IXS2 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC27.15■■□□□ 1.94
CCDC65Q8IXS2 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
CCDC65Q8IXS2 AC091060.1-201ENST00000623524 1766 ntBASIC27.14■■□□□ 1.94
CCDC65Q8IXS2 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CCDC65Q8IXS2 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CCDC65Q8IXS2 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CCDC65Q8IXS2 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
CCDC65Q8IXS2 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC27.13■■□□□ 1.93
CCDC65Q8IXS2 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
CCDC65Q8IXS2 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
CCDC65Q8IXS2 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
CCDC65Q8IXS2 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
CCDC65Q8IXS2 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC27.12■■□□□ 1.93
CCDC65Q8IXS2 AL157400.5-201ENST00000507624 621 ntBASIC27.12■■□□□ 1.93
CCDC65Q8IXS2 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC27.12■■□□□ 1.93
CCDC65Q8IXS2 AC022413.1-201ENST00000624602 984 ntBASIC27.12■■□□□ 1.93
CCDC65Q8IXS2 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CCDC65Q8IXS2 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CCDC65Q8IXS2 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CCDC65Q8IXS2 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
CCDC65Q8IXS2 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
CCDC65Q8IXS2 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
CCDC65Q8IXS2 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
CCDC65Q8IXS2 CEP120-209ENST00000515110 606 ntTSL 3 BASIC27.1■■□□□ 1.93
CCDC65Q8IXS2 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
CCDC65Q8IXS2 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC27.1■■□□□ 1.93
CCDC65Q8IXS2 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC27.09■■□□□ 1.93
CCDC65Q8IXS2 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC27.09■■□□□ 1.93
CCDC65Q8IXS2 AC092803.2-201ENST00000564287 1899 ntBASIC27.09■■□□□ 1.93
CCDC65Q8IXS2 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC27.09■■□□□ 1.93
CCDC65Q8IXS2 MOB2-207ENST00000614710 705 ntTSL 5 BASIC27.09■■□□□ 1.93
CCDC65Q8IXS2 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC27.09■■□□□ 1.93
CCDC65Q8IXS2 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC27.08■■□□□ 1.93
CCDC65Q8IXS2 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms