Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC18.58■□□□□ 0.56
HLA-DMBP28068 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HLA-DMBP28068 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC18.58■□□□□ 0.56
HLA-DMBP28068 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC18.58■□□□□ 0.56
HLA-DMBP28068 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC18.58■□□□□ 0.56
HLA-DMBP28068 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC18.58■□□□□ 0.56
HLA-DMBP28068 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HLA-DMBP28068 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HLA-DMBP28068 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HLA-DMBP28068 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC18.57■□□□□ 0.56
HLA-DMBP28068 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
HLA-DMBP28068 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HLA-DMBP28068 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HLA-DMBP28068 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
HLA-DMBP28068 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC18.57■□□□□ 0.56
HLA-DMBP28068 CHST11-202ENST00000546689 756 ntTSL 2 BASIC18.57■□□□□ 0.56
HLA-DMBP28068 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC18.57■□□□□ 0.56
HLA-DMBP28068 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
HLA-DMBP28068 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC18.57■□□□□ 0.56
HLA-DMBP28068 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
HLA-DMBP28068 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DMBP28068 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DMBP28068 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC18.56■□□□□ 0.56
HLA-DMBP28068 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
HLA-DMBP28068 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DMBP28068 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DMBP28068 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DMBP28068 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DMBP28068 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
HLA-DMBP28068 AGPS-202ENST00000409888 815 ntTSL 4 BASIC18.55■□□□□ 0.56
HLA-DMBP28068 GDI1-215ENST00000630693 786 ntTSL 4 BASIC18.55■□□□□ 0.56
HLA-DMBP28068 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DMBP28068 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DMBP28068 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC18.55■□□□□ 0.56
HLA-DMBP28068 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DMBP28068 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DMBP28068 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DMBP28068 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DMBP28068 MIR3648-2-201ENST00000581792 180 ntBASIC18.54■□□□□ 0.56
HLA-DMBP28068 MIR3648-1-201ENST00000615959 180 ntBASIC18.54■□□□□ 0.56
HLA-DMBP28068 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DMBP28068 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DMBP28068 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DMBP28068 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DMBP28068 RPS2-202ENST00000526522 924 ntTSL 2 BASIC18.53■□□□□ 0.56
HLA-DMBP28068 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC18.53■□□□□ 0.56
HLA-DMBP28068 DUX4L13-201ENST00000554103 1267 ntBASIC18.53■□□□□ 0.56
HLA-DMBP28068 AC016575.1-201ENST00000607026 382 ntBASIC18.53■□□□□ 0.56
HLA-DMBP28068 DUX4L15-201ENST00000611059 1267 ntBASIC18.53■□□□□ 0.56
HLA-DMBP28068 DUX4L23-201ENST00000615195 1269 ntBASIC18.53■□□□□ 0.56
HLA-DMBP28068 DUX4L24-201ENST00000617576 1269 ntBASIC18.53■□□□□ 0.56
HLA-DMBP28068 DUX4L22-201ENST00000618238 1269 ntBASIC18.53■□□□□ 0.56
HLA-DMBP28068 DUX4L20-201ENST00000619712 1269 ntBASIC18.53■□□□□ 0.56
HLA-DMBP28068 DUX4L21-201ENST00000622058 1269 ntBASIC18.53■□□□□ 0.56
HLA-DMBP28068 DUX4L10-201ENST00000622460 1267 ntBASIC18.53■□□□□ 0.56
HLA-DMBP28068 DUX4L25-201ENST00000624915 1269 ntBASIC18.53■□□□□ 0.56
HLA-DMBP28068 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC18.53■□□□□ 0.56
HLA-DMBP28068 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DMBP28068 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC18.53■□□□□ 0.56
HLA-DMBP28068 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DMBP28068 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.56
HLA-DMBP28068 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
HLA-DMBP28068 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
HLA-DMBP28068 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
HLA-DMBP28068 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DMBP28068 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC18.51■□□□□ 0.55
HLA-DMBP28068 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DMBP28068 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DMBP28068 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DMBP28068 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
HLA-DMBP28068 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
HLA-DMBP28068 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
HLA-DMBP28068 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DMBP28068 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DMBP28068 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC18.51■□□□□ 0.55
HLA-DMBP28068 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC18.51■□□□□ 0.55
HLA-DMBP28068 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DMBP28068 ERN1-208ENST00000606895 2068 ntBASIC18.51■□□□□ 0.55
HLA-DMBP28068 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
HLA-DMBP28068 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC18.5■□□□□ 0.55
HLA-DMBP28068 MIR639-201ENST00000384974 98 ntBASIC18.5■□□□□ 0.55
HLA-DMBP28068 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC18.5■□□□□ 0.55
HLA-DMBP28068 CR559946.2-201ENST00000623684 991 ntBASIC18.5■□□□□ 0.55
HLA-DMBP28068 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DMBP28068 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DMBP28068 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC18.49■□□□□ 0.55
HLA-DMBP28068 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DMBP28068 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DMBP28068 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DMBP28068 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DMBP28068 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DMBP28068 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DMBP28068 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DMBP28068 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DMBP28068 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DMBP28068 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DMBP28068 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DMBP28068 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
HLA-DMBP28068 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC18.47■□□□□ 0.55
HLA-DMBP28068 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms