Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
PCDHGA3Q9Y5H0 REST-210ENST00000638187 1334 ntTSL 5 BASIC23.91■■□□□ 1.42
PCDHGA3Q9Y5H0 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PCDHGA3Q9Y5H0 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC23.91■■□□□ 1.42
PCDHGA3Q9Y5H0 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC23.91■■□□□ 1.42
PCDHGA3Q9Y5H0 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
PCDHGA3Q9Y5H0 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
PCDHGA3Q9Y5H0 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
PCDHGA3Q9Y5H0 AC007029.1-201ENST00000604183 313 ntBASIC23.9■■□□□ 1.42
PCDHGA3Q9Y5H0 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.89■■□□□ 1.42
PCDHGA3Q9Y5H0 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
PCDHGA3Q9Y5H0 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC23.89■■□□□ 1.41
PCDHGA3Q9Y5H0 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC23.89■■□□□ 1.41
PCDHGA3Q9Y5H0 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC23.88■■□□□ 1.41
PCDHGA3Q9Y5H0 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
PCDHGA3Q9Y5H0 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
PCDHGA3Q9Y5H0 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC23.88■■□□□ 1.41
PCDHGA3Q9Y5H0 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PCDHGA3Q9Y5H0 GUK1-208ENST00000366728 842 ntTSL 2 BASIC23.87■■□□□ 1.41
PCDHGA3Q9Y5H0 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
PCDHGA3Q9Y5H0 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
PCDHGA3Q9Y5H0 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC23.87■■□□□ 1.41
PCDHGA3Q9Y5H0 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
PCDHGA3Q9Y5H0 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC23.87■■□□□ 1.41
PCDHGA3Q9Y5H0 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
PCDHGA3Q9Y5H0 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
PCDHGA3Q9Y5H0 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
PCDHGA3Q9Y5H0 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
PCDHGA3Q9Y5H0 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
PCDHGA3Q9Y5H0 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
PCDHGA3Q9Y5H0 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC23.86■■□□□ 1.41
PCDHGA3Q9Y5H0 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC23.86■■□□□ 1.41
PCDHGA3Q9Y5H0 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC23.85■■□□□ 1.41
PCDHGA3Q9Y5H0 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
PCDHGA3Q9Y5H0 AC100797.4-201ENST00000631653 1827 ntBASIC23.85■■□□□ 1.41
PCDHGA3Q9Y5H0 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC23.85■■□□□ 1.41
PCDHGA3Q9Y5H0 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.85■■□□□ 1.41
PCDHGA3Q9Y5H0 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC23.85■■□□□ 1.41
PCDHGA3Q9Y5H0 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHGA3Q9Y5H0 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHGA3Q9Y5H0 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
PCDHGA3Q9Y5H0 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC23.84■■□□□ 1.41
PCDHGA3Q9Y5H0 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC23.83■■□□□ 1.41
PCDHGA3Q9Y5H0 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
PCDHGA3Q9Y5H0 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
PCDHGA3Q9Y5H0 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHGA3Q9Y5H0 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC23.82■■□□□ 1.4
PCDHGA3Q9Y5H0 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHGA3Q9Y5H0 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHGA3Q9Y5H0 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCDHGA3Q9Y5H0 SMPD5-203ENST00000639008 1464 ntBASIC23.81■■□□□ 1.4
PCDHGA3Q9Y5H0 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
PCDHGA3Q9Y5H0 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCDHGA3Q9Y5H0 AL359258.2-201ENST00000564063 1566 ntBASIC23.81■■□□□ 1.4
PCDHGA3Q9Y5H0 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCDHGA3Q9Y5H0 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
PCDHGA3Q9Y5H0 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCDHGA3Q9Y5H0 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC23.8■■□□□ 1.4
PCDHGA3Q9Y5H0 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCDHGA3Q9Y5H0 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCDHGA3Q9Y5H0 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCDHGA3Q9Y5H0 AC129492.7-201ENST00000622992 756 ntBASIC23.8■■□□□ 1.4
PCDHGA3Q9Y5H0 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCDHGA3Q9Y5H0 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCDHGA3Q9Y5H0 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PCDHGA3Q9Y5H0 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHGA3Q9Y5H0 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC23.79■■□□□ 1.4
PCDHGA3Q9Y5H0 AC009831.1-201ENST00000580420 1582 ntBASIC23.79■■□□□ 1.4
PCDHGA3Q9Y5H0 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHGA3Q9Y5H0 AC133552.2-201ENST00000619106 1032 ntBASIC23.79■■□□□ 1.4
PCDHGA3Q9Y5H0 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
PCDHGA3Q9Y5H0 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
PCDHGA3Q9Y5H0 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDHGA3Q9Y5H0 AL592293.1-201ENST00000502889 1188 ntBASIC23.78■■□□□ 1.4
PCDHGA3Q9Y5H0 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC23.77■■□□□ 1.4
PCDHGA3Q9Y5H0 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
PCDHGA3Q9Y5H0 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PCDHGA3Q9Y5H0 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PCDHGA3Q9Y5H0 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC23.77■■□□□ 1.4
PCDHGA3Q9Y5H0 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHGA3Q9Y5H0 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHGA3Q9Y5H0 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHGA3Q9Y5H0 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHGA3Q9Y5H0 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC23.76■■□□□ 1.39
PCDHGA3Q9Y5H0 AC025884.2-201ENST00000553429 711 ntBASIC23.76■■□□□ 1.39
PCDHGA3Q9Y5H0 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC23.76■■□□□ 1.39
PCDHGA3Q9Y5H0 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHGA3Q9Y5H0 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHGA3Q9Y5H0 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHGA3Q9Y5H0 RARRES2P1-201ENST00000474487 481 ntBASIC23.75■■□□□ 1.39
PCDHGA3Q9Y5H0 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHGA3Q9Y5H0 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHGA3Q9Y5H0 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PCDHGA3Q9Y5H0 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PCDHGA3Q9Y5H0 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
PCDHGA3Q9Y5H0 AL121749.1-202ENST00000609313 2153 ntBASIC23.74■■□□□ 1.39
PCDHGA3Q9Y5H0 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC23.73■■□□□ 1.39
PCDHGA3Q9Y5H0 HES4-204ENST00000484667 667 ntTSL 3 BASIC23.73■■□□□ 1.39
PCDHGA3Q9Y5H0 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.73■■□□□ 1.39
PCDHGA3Q9Y5H0 AC026202.3-201ENST00000600805 1127 ntBASIC23.73■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms