Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
TRIM39Q9HCM9 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC24.53■■□□□ 1.52
TRIM39Q9HCM9 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC24.52■■□□□ 1.52
TRIM39Q9HCM9 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC24.52■■□□□ 1.52
TRIM39Q9HCM9 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
TRIM39Q9HCM9 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
TRIM39Q9HCM9 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
TRIM39Q9HCM9 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
TRIM39Q9HCM9 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
TRIM39Q9HCM9 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC24.5■■□□□ 1.51
TRIM39Q9HCM9 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
TRIM39Q9HCM9 RARRES2P2-201ENST00000394842 485 ntBASIC24.5■■□□□ 1.51
TRIM39Q9HCM9 ECEL1P2-201ENST00000461596 1295 ntBASIC24.5■■□□□ 1.51
TRIM39Q9HCM9 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC24.5■■□□□ 1.51
TRIM39Q9HCM9 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC24.5■■□□□ 1.51
TRIM39Q9HCM9 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC24.49■■□□□ 1.51
TRIM39Q9HCM9 AL157400.5-201ENST00000507624 621 ntBASIC24.49■■□□□ 1.51
TRIM39Q9HCM9 MOB2-207ENST00000614710 705 ntTSL 5 BASIC24.49■■□□□ 1.51
TRIM39Q9HCM9 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
TRIM39Q9HCM9 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
TRIM39Q9HCM9 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
TRIM39Q9HCM9 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
TRIM39Q9HCM9 SHF-208ENST00000560734 1731 ntTSL 3 BASIC24.48■■□□□ 1.51
TRIM39Q9HCM9 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
TRIM39Q9HCM9 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC24.47■■□□□ 1.51
TRIM39Q9HCM9 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC24.47■■□□□ 1.51
TRIM39Q9HCM9 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
TRIM39Q9HCM9 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC24.47■■□□□ 1.51
TRIM39Q9HCM9 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
TRIM39Q9HCM9 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC24.46■■□□□ 1.51
TRIM39Q9HCM9 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC24.45■■□□□ 1.51
TRIM39Q9HCM9 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
TRIM39Q9HCM9 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
TRIM39Q9HCM9 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
TRIM39Q9HCM9 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC24.44■■□□□ 1.5
TRIM39Q9HCM9 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
TRIM39Q9HCM9 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
TRIM39Q9HCM9 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
TRIM39Q9HCM9 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
TRIM39Q9HCM9 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC24.42■■□□□ 1.5
TRIM39Q9HCM9 AL449106.1-201ENST00000608517 1980 ntBASIC24.42■■□□□ 1.5
TRIM39Q9HCM9 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC24.42■■□□□ 1.5
TRIM39Q9HCM9 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
TRIM39Q9HCM9 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
TRIM39Q9HCM9 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
TRIM39Q9HCM9 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
TRIM39Q9HCM9 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
TRIM39Q9HCM9 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
TRIM39Q9HCM9 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
TRIM39Q9HCM9 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC24.41■■□□□ 1.5
TRIM39Q9HCM9 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC24.41■■□□□ 1.5
TRIM39Q9HCM9 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
TRIM39Q9HCM9 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
TRIM39Q9HCM9 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
TRIM39Q9HCM9 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC24.4■■□□□ 1.5
TRIM39Q9HCM9 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
TRIM39Q9HCM9 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
TRIM39Q9HCM9 SMPD5-203ENST00000639008 1464 ntBASIC24.39■■□□□ 1.5
TRIM39Q9HCM9 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
TRIM39Q9HCM9 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
TRIM39Q9HCM9 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC24.39■■□□□ 1.5
TRIM39Q9HCM9 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC24.39■■□□□ 1.5
TRIM39Q9HCM9 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
TRIM39Q9HCM9 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
TRIM39Q9HCM9 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC24.39■■□□□ 1.49
TRIM39Q9HCM9 REST-210ENST00000638187 1334 ntTSL 5 BASIC24.38■■□□□ 1.49
TRIM39Q9HCM9 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC24.38■■□□□ 1.49
TRIM39Q9HCM9 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
TRIM39Q9HCM9 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
TRIM39Q9HCM9 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
TRIM39Q9HCM9 AL359504.2-201ENST00000605506 1601 ntBASIC24.37■■□□□ 1.49
TRIM39Q9HCM9 AC025884.2-201ENST00000553429 711 ntBASIC24.37■■□□□ 1.49
TRIM39Q9HCM9 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
TRIM39Q9HCM9 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
TRIM39Q9HCM9 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.37■■□□□ 1.49
TRIM39Q9HCM9 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
TRIM39Q9HCM9 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC24.36■■□□□ 1.49
TRIM39Q9HCM9 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
TRIM39Q9HCM9 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
TRIM39Q9HCM9 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC24.36■■□□□ 1.49
TRIM39Q9HCM9 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC24.36■■□□□ 1.49
TRIM39Q9HCM9 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
TRIM39Q9HCM9 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
TRIM39Q9HCM9 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC24.35■■□□□ 1.49
TRIM39Q9HCM9 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
TRIM39Q9HCM9 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC24.35■■□□□ 1.49
TRIM39Q9HCM9 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
TRIM39Q9HCM9 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC24.35■■□□□ 1.49
TRIM39Q9HCM9 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC24.34■■□□□ 1.49
TRIM39Q9HCM9 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
TRIM39Q9HCM9 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC24.34■■□□□ 1.49
TRIM39Q9HCM9 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC24.34■■□□□ 1.49
TRIM39Q9HCM9 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC24.34■■□□□ 1.49
TRIM39Q9HCM9 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC24.34■■□□□ 1.49
TRIM39Q9HCM9 ABHD17AP5-201ENST00000580133 923 ntBASIC24.34■■□□□ 1.49
TRIM39Q9HCM9 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
TRIM39Q9HCM9 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
TRIM39Q9HCM9 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC24.33■■□□□ 1.49
TRIM39Q9HCM9 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
TRIM39Q9HCM9 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC24.32■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms