Protein–RNA interactions for Protein: Q9HBX3

SND1-IT1, Uncharacterized protein encoded by SND1-IT1, humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-IT1Q9HBX3 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SND1-IT1Q9HBX3 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SND1-IT1Q9HBX3 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SND1-IT1Q9HBX3 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SND1-IT1Q9HBX3 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SND1-IT1Q9HBX3 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SND1-IT1Q9HBX3 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
SND1-IT1Q9HBX3 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
SND1-IT1Q9HBX3 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SND1-IT1Q9HBX3 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SND1-IT1Q9HBX3 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SND1-IT1Q9HBX3 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SND1-IT1Q9HBX3 CAHM-201ENST00000604200 896 ntBASIC16.39■□□□□ 0.21
SND1-IT1Q9HBX3 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SND1-IT1Q9HBX3 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SND1-IT1Q9HBX3 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SND1-IT1Q9HBX3 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SND1-IT1Q9HBX3 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SND1-IT1Q9HBX3 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC16.38■□□□□ 0.21
SND1-IT1Q9HBX3 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SND1-IT1Q9HBX3 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SND1-IT1Q9HBX3 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SND1-IT1Q9HBX3 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SND1-IT1Q9HBX3 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SND1-IT1Q9HBX3 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC16.38■□□□□ 0.21
SND1-IT1Q9HBX3 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SND1-IT1Q9HBX3 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC16.38■□□□□ 0.21
SND1-IT1Q9HBX3 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SND1-IT1Q9HBX3 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
SND1-IT1Q9HBX3 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
SND1-IT1Q9HBX3 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SND1-IT1Q9HBX3 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC16.37■□□□□ 0.21
SND1-IT1Q9HBX3 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SND1-IT1Q9HBX3 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
SND1-IT1Q9HBX3 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
SND1-IT1Q9HBX3 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
SND1-IT1Q9HBX3 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC16.36■□□□□ 0.21
SND1-IT1Q9HBX3 LTK-203ENST00000453182 2412 ntTSL 2 BASIC16.36■□□□□ 0.21
SND1-IT1Q9HBX3 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC16.35■□□□□ 0.21
SND1-IT1Q9HBX3 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SND1-IT1Q9HBX3 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC16.35■□□□□ 0.21
SND1-IT1Q9HBX3 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SND1-IT1Q9HBX3 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SND1-IT1Q9HBX3 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC16.35■□□□□ 0.21
SND1-IT1Q9HBX3 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SND1-IT1Q9HBX3 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC16.35■□□□□ 0.21
SND1-IT1Q9HBX3 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SND1-IT1Q9HBX3 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
SND1-IT1Q9HBX3 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SND1-IT1Q9HBX3 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
SND1-IT1Q9HBX3 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SND1-IT1Q9HBX3 AC135983.2-203ENST00000454486 1613 ntBASIC16.34■□□□□ 0.21
SND1-IT1Q9HBX3 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC16.34■□□□□ 0.21
SND1-IT1Q9HBX3 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC16.34■□□□□ 0.21
SND1-IT1Q9HBX3 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
SND1-IT1Q9HBX3 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SND1-IT1Q9HBX3 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC16.33■□□□□ 0.21
SND1-IT1Q9HBX3 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
SND1-IT1Q9HBX3 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SND1-IT1Q9HBX3 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SND1-IT1Q9HBX3 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
SND1-IT1Q9HBX3 RPS2-209ENST00000529806 993 ntTSL 3 BASIC16.33■□□□□ 0.2
SND1-IT1Q9HBX3 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
SND1-IT1Q9HBX3 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SND1-IT1Q9HBX3 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SND1-IT1Q9HBX3 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SND1-IT1Q9HBX3 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
SND1-IT1Q9HBX3 AC136428.2-201ENST00000563187 214 ntBASIC16.32■□□□□ 0.2
SND1-IT1Q9HBX3 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
SND1-IT1Q9HBX3 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
SND1-IT1Q9HBX3 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC16.31■□□□□ 0.2
SND1-IT1Q9HBX3 MIR762-201ENST00000390236 83 ntBASIC16.31■□□□□ 0.2
SND1-IT1Q9HBX3 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SND1-IT1Q9HBX3 AC097358.2-201ENST00000607541 1159 ntBASIC16.31■□□□□ 0.2
SND1-IT1Q9HBX3 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SND1-IT1Q9HBX3 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SND1-IT1Q9HBX3 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
SND1-IT1Q9HBX3 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SND1-IT1Q9HBX3 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SND1-IT1Q9HBX3 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SND1-IT1Q9HBX3 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC16.3■□□□□ 0.2
SND1-IT1Q9HBX3 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SND1-IT1Q9HBX3 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC16.3■□□□□ 0.2
SND1-IT1Q9HBX3 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SND1-IT1Q9HBX3 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SND1-IT1Q9HBX3 WHAMMP2-203ENST00000563942 1603 ntBASIC16.3■□□□□ 0.2
SND1-IT1Q9HBX3 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SND1-IT1Q9HBX3 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SND1-IT1Q9HBX3 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SND1-IT1Q9HBX3 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SND1-IT1Q9HBX3 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SND1-IT1Q9HBX3 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SND1-IT1Q9HBX3 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SND1-IT1Q9HBX3 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SND1-IT1Q9HBX3 CEBPA-AS1-201ENST00000592982 2198 ntBASIC16.28■□□□□ 0.2
SND1-IT1Q9HBX3 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC16.28■□□□□ 0.2
SND1-IT1Q9HBX3 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SND1-IT1Q9HBX3 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SND1-IT1Q9HBX3 THRA-202ENST00000394121 2260 ntTSL 2 BASIC16.28■□□□□ 0.2
SND1-IT1Q9HBX3 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 145.6 ms