Protein–RNA interactions for Protein: P62312

LSM6, U6 snRNA-associated Sm-like protein LSm6, humanhuman

Known RBP Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6P62312 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LSM6P62312 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LSM6P62312 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LSM6P62312 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
LSM6P62312 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LSM6P62312 AC142472.1-201ENST00000612013 1741 ntBASIC21.75■■□□□ 1.07
LSM6P62312 HLA-V-202ENST00000446817 847 ntBASIC21.75■■□□□ 1.07
LSM6P62312 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LSM6P62312 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
LSM6P62312 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
LSM6P62312 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
LSM6P62312 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC21.74■■□□□ 1.07
LSM6P62312 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LSM6P62312 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LSM6P62312 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LSM6P62312 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LSM6P62312 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
LSM6P62312 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LSM6P62312 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LSM6P62312 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
LSM6P62312 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
LSM6P62312 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC21.73■■□□□ 1.07
LSM6P62312 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
LSM6P62312 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
LSM6P62312 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
LSM6P62312 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
LSM6P62312 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LSM6P62312 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LSM6P62312 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LSM6P62312 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
LSM6P62312 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.72■■□□□ 1.07
LSM6P62312 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC21.72■■□□□ 1.07
LSM6P62312 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.72■■□□□ 1.07
LSM6P62312 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
LSM6P62312 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.7■■□□□ 1.06
LSM6P62312 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LSM6P62312 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LSM6P62312 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC21.7■■□□□ 1.06
LSM6P62312 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC21.7■■□□□ 1.06
LSM6P62312 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.7■■□□□ 1.06
LSM6P62312 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LSM6P62312 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.7■■□□□ 1.06
LSM6P62312 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC21.7■■□□□ 1.06
LSM6P62312 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
LSM6P62312 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC21.7■■□□□ 1.06
LSM6P62312 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LSM6P62312 AC016575.1-201ENST00000607026 382 ntBASIC21.69■■□□□ 1.06
LSM6P62312 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LSM6P62312 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC21.69■■□□□ 1.06
LSM6P62312 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
LSM6P62312 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LSM6P62312 MIR7108-201ENST00000614319 87 ntBASIC21.68■■□□□ 1.06
LSM6P62312 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC21.68■■□□□ 1.06
LSM6P62312 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LSM6P62312 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LSM6P62312 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LSM6P62312 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LSM6P62312 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LSM6P62312 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
LSM6P62312 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LSM6P62312 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC21.65■■□□□ 1.06
LSM6P62312 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LSM6P62312 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC21.64■■□□□ 1.06
LSM6P62312 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LSM6P62312 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LSM6P62312 METRNL-202ENST00000570778 967 ntTSL 5 BASIC21.64■■□□□ 1.05
LSM6P62312 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC21.63■■□□□ 1.05
LSM6P62312 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
LSM6P62312 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LSM6P62312 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
LSM6P62312 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC21.63■■□□□ 1.05
LSM6P62312 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC21.63■■□□□ 1.05
LSM6P62312 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC21.63■■□□□ 1.05
LSM6P62312 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
LSM6P62312 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LSM6P62312 AL359258.2-201ENST00000564063 1566 ntBASIC21.62■■□□□ 1.05
LSM6P62312 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LSM6P62312 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
LSM6P62312 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LSM6P62312 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.62■■□□□ 1.05
LSM6P62312 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
LSM6P62312 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
LSM6P62312 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
LSM6P62312 AC126177.7-201ENST00000547904 679 ntBASIC21.61■■□□□ 1.05
LSM6P62312 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
LSM6P62312 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
LSM6P62312 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.6■■□□□ 1.05
LSM6P62312 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC21.6■■□□□ 1.05
LSM6P62312 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
LSM6P62312 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
LSM6P62312 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LSM6P62312 AC091060.1-201ENST00000623524 1766 ntBASIC21.6■■□□□ 1.05
LSM6P62312 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.6■■□□□ 1.05
LSM6P62312 AC135731.1-201ENST00000569415 2548 ntBASIC21.6■■□□□ 1.05
LSM6P62312 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
LSM6P62312 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC21.59■■□□□ 1.05
LSM6P62312 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LSM6P62312 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
LSM6P62312 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
LSM6P62312 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms