Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC27.02■■□□□ 1.92
TTC3P53804 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC27.02■■□□□ 1.92
TTC3P53804 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC27.02■■□□□ 1.92
TTC3P53804 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
TTC3P53804 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
TTC3P53804 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC27.01■■□□□ 1.91
TTC3P53804 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
TTC3P53804 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC27.01■■□□□ 1.91
TTC3P53804 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC27■■□□□ 1.91
TTC3P53804 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC27■■□□□ 1.91
TTC3P53804 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC27■■□□□ 1.91
TTC3P53804 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC27■■□□□ 1.91
TTC3P53804 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
TTC3P53804 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC26.99■■□□□ 1.91
TTC3P53804 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC26.99■■□□□ 1.91
TTC3P53804 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC26.99■■□□□ 1.91
TTC3P53804 AL035685.1-201ENST00000636663 812 ntBASIC26.99■■□□□ 1.91
TTC3P53804 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC26.98■■□□□ 1.91
TTC3P53804 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC26.98■■□□□ 1.91
TTC3P53804 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC26.98■■□□□ 1.91
TTC3P53804 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
TTC3P53804 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC26.98■■□□□ 1.91
TTC3P53804 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC26.98■■□□□ 1.91
TTC3P53804 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC26.97■■□□□ 1.91
TTC3P53804 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC26.97■■□□□ 1.91
TTC3P53804 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC26.97■■□□□ 1.91
TTC3P53804 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
TTC3P53804 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC26.97■■□□□ 1.91
TTC3P53804 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC26.97■■□□□ 1.91
TTC3P53804 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
TTC3P53804 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
TTC3P53804 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
TTC3P53804 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
TTC3P53804 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC26.95■■□□□ 1.91
TTC3P53804 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC26.95■■□□□ 1.9
TTC3P53804 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
TTC3P53804 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC26.95■■□□□ 1.9
TTC3P53804 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC26.95■■□□□ 1.9
TTC3P53804 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
TTC3P53804 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
TTC3P53804 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC26.94■■□□□ 1.9
TTC3P53804 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC26.94■■□□□ 1.9
TTC3P53804 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC26.94■■□□□ 1.9
TTC3P53804 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
TTC3P53804 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
TTC3P53804 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC26.93■■□□□ 1.9
TTC3P53804 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
TTC3P53804 MIR3960-201ENST00000583311 91 ntBASIC26.93■■□□□ 1.9
TTC3P53804 TRIR-205ENST00000592273 783 ntTSL 3 BASIC26.93■■□□□ 1.9
TTC3P53804 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC26.93■■□□□ 1.9
TTC3P53804 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC26.93■■□□□ 1.9
TTC3P53804 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC26.93■■□□□ 1.9
TTC3P53804 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
TTC3P53804 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC26.92■■□□□ 1.9
TTC3P53804 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC26.92■■□□□ 1.9
TTC3P53804 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC26.91■■□□□ 1.9
TTC3P53804 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
TTC3P53804 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC26.91■■□□□ 1.9
TTC3P53804 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC26.91■■□□□ 1.9
TTC3P53804 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
TTC3P53804 BEX3-202ENST00000372634 753 ntTSL 2 BASIC26.9■■□□□ 1.9
TTC3P53804 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
TTC3P53804 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC26.9■■□□□ 1.9
TTC3P53804 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
TTC3P53804 MIR6765-201ENST00000614092 87 ntBASIC26.89■■□□□ 1.9
TTC3P53804 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
TTC3P53804 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
TTC3P53804 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
TTC3P53804 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC26.88■■□□□ 1.89
TTC3P53804 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC26.88■■□□□ 1.89
TTC3P53804 AC009299.2-201ENST00000482477 511 ntBASIC26.87■■□□□ 1.89
TTC3P53804 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC26.87■■□□□ 1.89
TTC3P53804 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
TTC3P53804 PVT1_1.1-201ENST00000615125 194 ntBASIC26.87■■□□□ 1.89
TTC3P53804 AC074183.2-201ENST00000623112 922 ntBASIC26.87■■□□□ 1.89
TTC3P53804 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
TTC3P53804 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
TTC3P53804 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC26.86■■□□□ 1.89
TTC3P53804 AC010980.1-201ENST00000587192 1142 ntBASIC26.86■■□□□ 1.89
TTC3P53804 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC26.85■■□□□ 1.89
TTC3P53804 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
TTC3P53804 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
TTC3P53804 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC26.84■■□□□ 1.89
TTC3P53804 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC26.84■■□□□ 1.89
TTC3P53804 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC26.84■■□□□ 1.89
TTC3P53804 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
TTC3P53804 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
TTC3P53804 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
TTC3P53804 AC139795.1-202ENST00000500444 432 ntBASIC26.83■■□□□ 1.89
TTC3P53804 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
TTC3P53804 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC26.83■■□□□ 1.89
TTC3P53804 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC26.83■■□□□ 1.89
TTC3P53804 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
TTC3P53804 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
TTC3P53804 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
TTC3P53804 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
TTC3P53804 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.89
TTC3P53804 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
TTC3P53804 HYI-210ENST00000486909 905 ntTSL 5 BASIC26.82■■□□□ 1.88
TTC3P53804 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC26.82■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms