Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CDX4O14627 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC24.44■■□□□ 1.5
CDX4O14627 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CDX4O14627 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
CDX4O14627 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CDX4O14627 AC018755.3-202ENST00000596210 929 ntBASIC24.43■■□□□ 1.5
CDX4O14627 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC24.43■■□□□ 1.5
CDX4O14627 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC24.43■■□□□ 1.5
CDX4O14627 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CDX4O14627 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CDX4O14627 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
CDX4O14627 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC24.42■■□□□ 1.5
CDX4O14627 AL356441.2-201ENST00000443009 864 ntBASIC24.42■■□□□ 1.5
CDX4O14627 PRTG-204ENST00000561292 833 ntTSL 3 BASIC24.42■■□□□ 1.5
CDX4O14627 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC24.42■■□□□ 1.5
CDX4O14627 MIR3960-201ENST00000583311 91 ntBASIC24.42■■□□□ 1.5
CDX4O14627 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CDX4O14627 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
CDX4O14627 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CDX4O14627 IDNK-201ENST00000376417 511 ntTSL 5 BASIC24.4■■□□□ 1.5
CDX4O14627 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CDX4O14627 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CDX4O14627 AC103724.3-201ENST00000564481 992 ntBASIC24.4■■□□□ 1.5
CDX4O14627 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
CDX4O14627 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
CDX4O14627 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC24.39■■□□□ 1.49
CDX4O14627 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CDX4O14627 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC24.39■■□□□ 1.49
CDX4O14627 AC100797.4-201ENST00000631653 1827 ntBASIC24.39■■□□□ 1.49
CDX4O14627 AP004833.2-201ENST00000532228 1454 ntBASIC24.38■■□□□ 1.49
CDX4O14627 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CDX4O14627 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CDX4O14627 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
CDX4O14627 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC24.38■■□□□ 1.49
CDX4O14627 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC24.38■■□□□ 1.49
CDX4O14627 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
CDX4O14627 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
CDX4O14627 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC24.37■■□□□ 1.49
CDX4O14627 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC24.37■■□□□ 1.49
CDX4O14627 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC24.37■■□□□ 1.49
CDX4O14627 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC24.37■■□□□ 1.49
CDX4O14627 MIR935-201ENST00000401179 91 ntBASIC24.36■■□□□ 1.49
CDX4O14627 IDNK-203ENST00000405990 629 ntTSL 2 BASIC24.36■■□□□ 1.49
CDX4O14627 AL031848.2-201ENST00000607670 837 ntBASIC24.36■■□□□ 1.49
CDX4O14627 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC24.36■■□□□ 1.49
CDX4O14627 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
CDX4O14627 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC24.35■■□□□ 1.49
CDX4O14627 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC24.35■■□□□ 1.49
CDX4O14627 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC24.34■■□□□ 1.49
CDX4O14627 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
CDX4O14627 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC24.34■■□□□ 1.49
CDX4O14627 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
CDX4O14627 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CDX4O14627 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC24.33■■□□□ 1.49
CDX4O14627 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC24.33■■□□□ 1.48
CDX4O14627 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CDX4O14627 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CDX4O14627 MTX2-204ENST00000443241 799 ntTSL 3 BASIC24.31■■□□□ 1.48
CDX4O14627 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
CDX4O14627 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
CDX4O14627 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CDX4O14627 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
CDX4O14627 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC24.3■■□□□ 1.48
CDX4O14627 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
CDX4O14627 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CDX4O14627 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC24.29■■□□□ 1.48
CDX4O14627 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
CDX4O14627 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
CDX4O14627 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC24.28■■□□□ 1.48
CDX4O14627 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CDX4O14627 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC24.28■■□□□ 1.48
CDX4O14627 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC24.28■■□□□ 1.48
CDX4O14627 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
CDX4O14627 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CDX4O14627 AC239859.2-201ENST00000444165 318 ntBASIC24.27■■□□□ 1.48
CDX4O14627 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
CDX4O14627 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CDX4O14627 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC24.26■■□□□ 1.47
CDX4O14627 RNF146-205ENST00000477776 762 ntTSL 3 BASIC24.26■■□□□ 1.47
CDX4O14627 LSM7-203ENST00000585409 512 ntTSL 2 BASIC24.26■■□□□ 1.47
CDX4O14627 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
CDX4O14627 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CDX4O14627 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC24.25■■□□□ 1.47
CDX4O14627 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CDX4O14627 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CDX4O14627 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CDX4O14627 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC24.24■■□□□ 1.47
CDX4O14627 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
CDX4O14627 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CDX4O14627 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
CDX4O14627 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC24.24■■□□□ 1.47
CDX4O14627 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
CDX4O14627 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CDX4O14627 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC24.23■■□□□ 1.47
CDX4O14627 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC24.23■■□□□ 1.47
CDX4O14627 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
CDX4O14627 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
CDX4O14627 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
CDX4O14627 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
CDX4O14627 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms