Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
PDLIM1O00151 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
PDLIM1O00151 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
PDLIM1O00151 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC23.36■■□□□ 1.33
PDLIM1O00151 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
PDLIM1O00151 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
PDLIM1O00151 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
PDLIM1O00151 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
PDLIM1O00151 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
PDLIM1O00151 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.36■■□□□ 1.33
PDLIM1O00151 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
PDLIM1O00151 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
PDLIM1O00151 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
PDLIM1O00151 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC23.35■■□□□ 1.33
PDLIM1O00151 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PDLIM1O00151 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PDLIM1O00151 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC23.35■■□□□ 1.33
PDLIM1O00151 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
PDLIM1O00151 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
PDLIM1O00151 CLDN5-201ENST00000403084 2357 ntBASIC23.35■■□□□ 1.33
PDLIM1O00151 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
PDLIM1O00151 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC23.35■■□□□ 1.33
PDLIM1O00151 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC23.34■■□□□ 1.33
PDLIM1O00151 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PDLIM1O00151 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
PDLIM1O00151 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PDLIM1O00151 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PDLIM1O00151 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
PDLIM1O00151 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
PDLIM1O00151 THRA-202ENST00000394121 2260 ntTSL 2 BASIC23.33■■□□□ 1.33
PDLIM1O00151 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
PDLIM1O00151 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.33■■□□□ 1.32
PDLIM1O00151 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PDLIM1O00151 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PDLIM1O00151 AC133561.1-201ENST00000568600 2415 ntBASIC23.32■■□□□ 1.32
PDLIM1O00151 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC23.31■■□□□ 1.32
PDLIM1O00151 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC23.31■■□□□ 1.32
PDLIM1O00151 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC23.31■■□□□ 1.32
PDLIM1O00151 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
PDLIM1O00151 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC23.31■■□□□ 1.32
PDLIM1O00151 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC23.31■■□□□ 1.32
PDLIM1O00151 AC044849.2-201ENST00000606596 710 ntBASIC23.31■■□□□ 1.32
PDLIM1O00151 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC23.31■■□□□ 1.32
PDLIM1O00151 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PDLIM1O00151 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC23.3■■□□□ 1.32
PDLIM1O00151 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC23.3■■□□□ 1.32
PDLIM1O00151 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
PDLIM1O00151 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
PDLIM1O00151 DUSP8P4-201ENST00000399538 1761 ntBASIC23.29■■□□□ 1.32
PDLIM1O00151 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
PDLIM1O00151 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PDLIM1O00151 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PDLIM1O00151 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
PDLIM1O00151 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
PDLIM1O00151 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
PDLIM1O00151 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
PDLIM1O00151 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC23.29■■□□□ 1.32
PDLIM1O00151 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PDLIM1O00151 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC23.28■■□□□ 1.32
PDLIM1O00151 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PDLIM1O00151 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
PDLIM1O00151 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PDLIM1O00151 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
PDLIM1O00151 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
PDLIM1O00151 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PDLIM1O00151 AC092803.2-201ENST00000564287 1899 ntBASIC23.27■■□□□ 1.32
PDLIM1O00151 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
PDLIM1O00151 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
PDLIM1O00151 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC23.27■■□□□ 1.32
PDLIM1O00151 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PDLIM1O00151 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PDLIM1O00151 AC018358.1-201ENST00000631079 1402 ntBASIC23.26■■□□□ 1.31
PDLIM1O00151 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
PDLIM1O00151 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
PDLIM1O00151 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PDLIM1O00151 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
PDLIM1O00151 AC079834.2-201ENST00000609776 1949 ntBASIC23.25■■□□□ 1.31
PDLIM1O00151 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
PDLIM1O00151 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC23.24■■□□□ 1.31
PDLIM1O00151 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
PDLIM1O00151 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
PDLIM1O00151 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC23.23■■□□□ 1.31
PDLIM1O00151 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PDLIM1O00151 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PDLIM1O00151 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PDLIM1O00151 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PDLIM1O00151 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PDLIM1O00151 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PDLIM1O00151 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
PDLIM1O00151 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PDLIM1O00151 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PDLIM1O00151 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PDLIM1O00151 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.21■■□□□ 1.31
PDLIM1O00151 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PDLIM1O00151 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC23.2■■□□□ 1.3
PDLIM1O00151 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC23.2■■□□□ 1.3
PDLIM1O00151 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
PDLIM1O00151 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
PDLIM1O00151 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC23.2■■□□□ 1.3
PDLIM1O00151 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms