Protein–RNA interactions for Protein: A2RU48

SMCO3, Single-pass membrane and coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO3A2RU48 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC19.88■□□□□ 0.77
SMCO3A2RU48 AC018358.1-201ENST00000631079 1402 ntBASIC19.88■□□□□ 0.77
SMCO3A2RU48 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC19.88■□□□□ 0.77
SMCO3A2RU48 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC19.88■□□□□ 0.77
SMCO3A2RU48 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC19.88■□□□□ 0.77
SMCO3A2RU48 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SMCO3A2RU48 RPS2-209ENST00000529806 993 ntTSL 3 BASIC19.87■□□□□ 0.77
SMCO3A2RU48 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
SMCO3A2RU48 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC19.86■□□□□ 0.77
SMCO3A2RU48 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
SMCO3A2RU48 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMCO3A2RU48 CAHM-201ENST00000604200 896 ntBASIC19.86■□□□□ 0.77
SMCO3A2RU48 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SMCO3A2RU48 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMCO3A2RU48 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC19.85■□□□□ 0.77
SMCO3A2RU48 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
SMCO3A2RU48 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SMCO3A2RU48 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMCO3A2RU48 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.84■□□□□ 0.77
SMCO3A2RU48 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMCO3A2RU48 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SMCO3A2RU48 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC19.84■□□□□ 0.77
SMCO3A2RU48 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC19.84■□□□□ 0.77
SMCO3A2RU48 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
SMCO3A2RU48 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMCO3A2RU48 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
SMCO3A2RU48 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMCO3A2RU48 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMCO3A2RU48 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMCO3A2RU48 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMCO3A2RU48 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SMCO3A2RU48 AC145676.1-201ENST00000514988 2004 ntBASIC19.83■□□□□ 0.77
SMCO3A2RU48 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC19.83■□□□□ 0.77
SMCO3A2RU48 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
SMCO3A2RU48 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.83■□□□□ 0.76
SMCO3A2RU48 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SMCO3A2RU48 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SMCO3A2RU48 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC19.83■□□□□ 0.76
SMCO3A2RU48 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SMCO3A2RU48 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMCO3A2RU48 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC19.82■□□□□ 0.76
SMCO3A2RU48 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
SMCO3A2RU48 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMCO3A2RU48 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMCO3A2RU48 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SMCO3A2RU48 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SMCO3A2RU48 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC19.82■□□□□ 0.76
SMCO3A2RU48 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMCO3A2RU48 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC19.82■□□□□ 0.76
SMCO3A2RU48 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMCO3A2RU48 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SMCO3A2RU48 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMCO3A2RU48 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
SMCO3A2RU48 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC19.81■□□□□ 0.76
SMCO3A2RU48 AC097358.2-201ENST00000607541 1159 ntBASIC19.81■□□□□ 0.76
SMCO3A2RU48 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SMCO3A2RU48 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
SMCO3A2RU48 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
SMCO3A2RU48 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC19.8■□□□□ 0.76
SMCO3A2RU48 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC19.8■□□□□ 0.76
SMCO3A2RU48 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC19.8■□□□□ 0.76
SMCO3A2RU48 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMCO3A2RU48 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC19.8■□□□□ 0.76
SMCO3A2RU48 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
SMCO3A2RU48 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMCO3A2RU48 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMCO3A2RU48 MIR762-201ENST00000390236 83 ntBASIC19.79■□□□□ 0.76
SMCO3A2RU48 AC135983.2-203ENST00000454486 1613 ntBASIC19.79■□□□□ 0.76
SMCO3A2RU48 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMCO3A2RU48 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMCO3A2RU48 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC19.78■□□□□ 0.76
SMCO3A2RU48 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMCO3A2RU48 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMCO3A2RU48 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SMCO3A2RU48 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMCO3A2RU48 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMCO3A2RU48 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SMCO3A2RU48 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMCO3A2RU48 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.77■□□□□ 0.76
SMCO3A2RU48 AC020928.2-201ENST00000588717 2197 ntBASIC19.77■□□□□ 0.76
SMCO3A2RU48 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SMCO3A2RU48 AC136428.2-201ENST00000563187 214 ntBASIC19.77■□□□□ 0.76
SMCO3A2RU48 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMCO3A2RU48 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
SMCO3A2RU48 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.75
SMCO3A2RU48 WHAMMP2-203ENST00000563942 1603 ntBASIC19.76■□□□□ 0.75
SMCO3A2RU48 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC19.76■□□□□ 0.75
SMCO3A2RU48 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC19.76■□□□□ 0.75
SMCO3A2RU48 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMCO3A2RU48 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMCO3A2RU48 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC19.76■□□□□ 0.75
SMCO3A2RU48 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SMCO3A2RU48 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
SMCO3A2RU48 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMCO3A2RU48 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMCO3A2RU48 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMCO3A2RU48 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SMCO3A2RU48 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SMCO3A2RU48 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SMCO3A2RU48 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms