Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC24.38■■□□□ 1.49
PTCHD3Q3KNS1 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC24.38■■□□□ 1.49
PTCHD3Q3KNS1 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
PTCHD3Q3KNS1 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC24.38■■□□□ 1.49
PTCHD3Q3KNS1 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC24.37■■□□□ 1.49
PTCHD3Q3KNS1 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
PTCHD3Q3KNS1 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
PTCHD3Q3KNS1 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
PTCHD3Q3KNS1 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
PTCHD3Q3KNS1 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
PTCHD3Q3KNS1 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
PTCHD3Q3KNS1 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
PTCHD3Q3KNS1 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
PTCHD3Q3KNS1 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC24.35■■□□□ 1.49
PTCHD3Q3KNS1 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
PTCHD3Q3KNS1 HSD17B1P1-201ENST00000590052 955 ntBASIC24.35■■□□□ 1.49
PTCHD3Q3KNS1 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
PTCHD3Q3KNS1 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
PTCHD3Q3KNS1 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC24.34■■□□□ 1.49
PTCHD3Q3KNS1 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC24.34■■□□□ 1.49
PTCHD3Q3KNS1 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PTCHD3Q3KNS1 ABHD17AP3-201ENST00000503096 1137 ntBASIC24.34■■□□□ 1.49
PTCHD3Q3KNS1 RPS2-210ENST00000530225 765 ntTSL 2 BASIC24.34■■□□□ 1.49
PTCHD3Q3KNS1 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PTCHD3Q3KNS1 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
PTCHD3Q3KNS1 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
PTCHD3Q3KNS1 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC24.33■■□□□ 1.48
PTCHD3Q3KNS1 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
PTCHD3Q3KNS1 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC24.33■■□□□ 1.48
PTCHD3Q3KNS1 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
PTCHD3Q3KNS1 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
PTCHD3Q3KNS1 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC24.32■■□□□ 1.48
PTCHD3Q3KNS1 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
PTCHD3Q3KNS1 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC24.32■■□□□ 1.48
PTCHD3Q3KNS1 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
PTCHD3Q3KNS1 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
PTCHD3Q3KNS1 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC24.31■■□□□ 1.48
PTCHD3Q3KNS1 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC24.31■■□□□ 1.48
PTCHD3Q3KNS1 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC24.31■■□□□ 1.48
PTCHD3Q3KNS1 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
PTCHD3Q3KNS1 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
PTCHD3Q3KNS1 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PTCHD3Q3KNS1 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PTCHD3Q3KNS1 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC24.3■■□□□ 1.48
PTCHD3Q3KNS1 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
PTCHD3Q3KNS1 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC24.29■■□□□ 1.48
PTCHD3Q3KNS1 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
PTCHD3Q3KNS1 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
PTCHD3Q3KNS1 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
PTCHD3Q3KNS1 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
PTCHD3Q3KNS1 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
PTCHD3Q3KNS1 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC24.29■■□□□ 1.48
PTCHD3Q3KNS1 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
PTCHD3Q3KNS1 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
PTCHD3Q3KNS1 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
PTCHD3Q3KNS1 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
PTCHD3Q3KNS1 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
PTCHD3Q3KNS1 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC24.28■■□□□ 1.48
PTCHD3Q3KNS1 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PTCHD3Q3KNS1 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PTCHD3Q3KNS1 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
PTCHD3Q3KNS1 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
PTCHD3Q3KNS1 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
PTCHD3Q3KNS1 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
PTCHD3Q3KNS1 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
PTCHD3Q3KNS1 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
PTCHD3Q3KNS1 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
PTCHD3Q3KNS1 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC24.26■■□□□ 1.47
PTCHD3Q3KNS1 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC24.26■■□□□ 1.47
PTCHD3Q3KNS1 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
PTCHD3Q3KNS1 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
PTCHD3Q3KNS1 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
PTCHD3Q3KNS1 BRD4-212ENST00000630599 726 ntTSL 2 BASIC24.25■■□□□ 1.47
PTCHD3Q3KNS1 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
PTCHD3Q3KNS1 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC24.24■■□□□ 1.47
PTCHD3Q3KNS1 SRP68-213ENST00000629930 165 ntTSL 5 BASIC24.24■■□□□ 1.47
PTCHD3Q3KNS1 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PTCHD3Q3KNS1 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PTCHD3Q3KNS1 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
PTCHD3Q3KNS1 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC24.24■■□□□ 1.47
PTCHD3Q3KNS1 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC24.23■■□□□ 1.47
PTCHD3Q3KNS1 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
PTCHD3Q3KNS1 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
PTCHD3Q3KNS1 AC008813.1-201ENST00000536597 885 ntBASIC24.23■■□□□ 1.47
PTCHD3Q3KNS1 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC24.23■■□□□ 1.47
PTCHD3Q3KNS1 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC24.23■■□□□ 1.47
PTCHD3Q3KNS1 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
PTCHD3Q3KNS1 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
PTCHD3Q3KNS1 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
PTCHD3Q3KNS1 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC24.22■■□□□ 1.47
PTCHD3Q3KNS1 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC24.22■■□□□ 1.47
PTCHD3Q3KNS1 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
PTCHD3Q3KNS1 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
PTCHD3Q3KNS1 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC24.21■■□□□ 1.47
PTCHD3Q3KNS1 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC24.21■■□□□ 1.47
PTCHD3Q3KNS1 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
PTCHD3Q3KNS1 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC24.2■■□□□ 1.47
PTCHD3Q3KNS1 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
PTCHD3Q3KNS1 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
PTCHD3Q3KNS1 TPT1-202ENST00000379055 948 ntTSL 2 BASIC24.2■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms