Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
LMX1BO60663 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
LMX1BO60663 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
LMX1BO60663 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
LMX1BO60663 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
LMX1BO60663 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
LMX1BO60663 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
LMX1BO60663 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC21.87■■□□□ 1.09
LMX1BO60663 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
LMX1BO60663 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
LMX1BO60663 AC018358.1-201ENST00000631079 1402 ntBASIC21.86■■□□□ 1.09
LMX1BO60663 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
LMX1BO60663 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
LMX1BO60663 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LMX1BO60663 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC21.85■■□□□ 1.09
LMX1BO60663 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LMX1BO60663 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
LMX1BO60663 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
LMX1BO60663 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
LMX1BO60663 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC21.84■■□□□ 1.09
LMX1BO60663 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC21.84■■□□□ 1.09
LMX1BO60663 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
LMX1BO60663 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
LMX1BO60663 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.09
LMX1BO60663 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
LMX1BO60663 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC21.83■■□□□ 1.09
LMX1BO60663 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC21.83■■□□□ 1.09
LMX1BO60663 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
LMX1BO60663 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LMX1BO60663 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LMX1BO60663 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LMX1BO60663 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LMX1BO60663 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LMX1BO60663 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LMX1BO60663 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LMX1BO60663 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LMX1BO60663 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
LMX1BO60663 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LMX1BO60663 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
LMX1BO60663 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LMX1BO60663 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
LMX1BO60663 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LMX1BO60663 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC21.8■■□□□ 1.08
LMX1BO60663 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LMX1BO60663 DUX4L13-201ENST00000554103 1267 ntBASIC21.79■■□□□ 1.08
LMX1BO60663 METRNL-202ENST00000570778 967 ntTSL 5 BASIC21.79■■□□□ 1.08
LMX1BO60663 DUX4L15-201ENST00000611059 1267 ntBASIC21.79■■□□□ 1.08
LMX1BO60663 DUX4L23-201ENST00000615195 1269 ntBASIC21.79■■□□□ 1.08
LMX1BO60663 DUX4L24-201ENST00000617576 1269 ntBASIC21.79■■□□□ 1.08
LMX1BO60663 DUX4L22-201ENST00000618238 1269 ntBASIC21.79■■□□□ 1.08
LMX1BO60663 DUX4L20-201ENST00000619712 1269 ntBASIC21.79■■□□□ 1.08
LMX1BO60663 DUX4L21-201ENST00000622058 1269 ntBASIC21.79■■□□□ 1.08
LMX1BO60663 DUX4L10-201ENST00000622460 1267 ntBASIC21.79■■□□□ 1.08
LMX1BO60663 DUX4L25-201ENST00000624915 1269 ntBASIC21.79■■□□□ 1.08
LMX1BO60663 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LMX1BO60663 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC21.79■■□□□ 1.08
LMX1BO60663 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
LMX1BO60663 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
LMX1BO60663 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LMX1BO60663 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LMX1BO60663 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC21.77■■□□□ 1.08
LMX1BO60663 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LMX1BO60663 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
LMX1BO60663 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
LMX1BO60663 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
LMX1BO60663 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LMX1BO60663 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.76■■□□□ 1.07
LMX1BO60663 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LMX1BO60663 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC21.76■■□□□ 1.07
LMX1BO60663 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
LMX1BO60663 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.75■■□□□ 1.07
LMX1BO60663 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC21.75■■□□□ 1.07
LMX1BO60663 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC21.75■■□□□ 1.07
LMX1BO60663 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LMX1BO60663 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
LMX1BO60663 AL449106.1-201ENST00000608517 1980 ntBASIC21.74■■□□□ 1.07
LMX1BO60663 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.74■■□□□ 1.07
LMX1BO60663 HES6-205ENST00000409356 528 ntTSL 2 BASIC21.74■■□□□ 1.07
LMX1BO60663 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
LMX1BO60663 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LMX1BO60663 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LMX1BO60663 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
LMX1BO60663 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
LMX1BO60663 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC21.73■■□□□ 1.07
LMX1BO60663 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LMX1BO60663 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
LMX1BO60663 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
LMX1BO60663 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LMX1BO60663 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC21.72■■□□□ 1.07
LMX1BO60663 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
LMX1BO60663 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC21.72■■□□□ 1.07
LMX1BO60663 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.71■■□□□ 1.07
LMX1BO60663 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.71■■□□□ 1.07
LMX1BO60663 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
LMX1BO60663 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
LMX1BO60663 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
LMX1BO60663 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LMX1BO60663 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC21.7■■□□□ 1.06
LMX1BO60663 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC21.7■■□□□ 1.06
LMX1BO60663 CHML-204ENST00000638121 920 ntTSL 2 BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms