Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
TCRBV3S1A0A5B6 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC23.44■■□□□ 1.34
TCRBV3S1A0A5B6 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC23.44■■□□□ 1.34
TCRBV3S1A0A5B6 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
TCRBV3S1A0A5B6 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC23.43■■□□□ 1.34
TCRBV3S1A0A5B6 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC23.43■■□□□ 1.34
TCRBV3S1A0A5B6 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC23.42■■□□□ 1.34
TCRBV3S1A0A5B6 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC23.42■■□□□ 1.34
TCRBV3S1A0A5B6 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
TCRBV3S1A0A5B6 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
TCRBV3S1A0A5B6 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC23.42■■□□□ 1.34
TCRBV3S1A0A5B6 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
TCRBV3S1A0A5B6 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC23.41■■□□□ 1.34
TCRBV3S1A0A5B6 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.41■■□□□ 1.34
TCRBV3S1A0A5B6 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC23.41■■□□□ 1.34
TCRBV3S1A0A5B6 AP004609.3-201ENST00000610705 1884 ntBASIC23.41■■□□□ 1.34
TCRBV3S1A0A5B6 AC135983.2-203ENST00000454486 1613 ntBASIC23.41■■□□□ 1.34
TCRBV3S1A0A5B6 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
TCRBV3S1A0A5B6 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
TCRBV3S1A0A5B6 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
TCRBV3S1A0A5B6 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC23.39■■□□□ 1.34
TCRBV3S1A0A5B6 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC23.39■■□□□ 1.34
TCRBV3S1A0A5B6 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
TCRBV3S1A0A5B6 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
TCRBV3S1A0A5B6 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
TCRBV3S1A0A5B6 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.34
TCRBV3S1A0A5B6 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
TCRBV3S1A0A5B6 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
TCRBV3S1A0A5B6 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
TCRBV3S1A0A5B6 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
TCRBV3S1A0A5B6 LTK-203ENST00000453182 2412 ntTSL 2 BASIC23.37■■□□□ 1.33
TCRBV3S1A0A5B6 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
TCRBV3S1A0A5B6 ERN1-208ENST00000606895 2068 ntBASIC23.36■■□□□ 1.33
TCRBV3S1A0A5B6 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
TCRBV3S1A0A5B6 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC23.35■■□□□ 1.33
TCRBV3S1A0A5B6 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
TCRBV3S1A0A5B6 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
TCRBV3S1A0A5B6 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
TCRBV3S1A0A5B6 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
TCRBV3S1A0A5B6 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
TCRBV3S1A0A5B6 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
TCRBV3S1A0A5B6 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC23.32■■□□□ 1.32
TCRBV3S1A0A5B6 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
TCRBV3S1A0A5B6 THRA-202ENST00000394121 2260 ntTSL 2 BASIC23.32■■□□□ 1.32
TCRBV3S1A0A5B6 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC23.32■■□□□ 1.32
TCRBV3S1A0A5B6 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC23.32■■□□□ 1.32
TCRBV3S1A0A5B6 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
TCRBV3S1A0A5B6 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.31■■□□□ 1.32
TCRBV3S1A0A5B6 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC23.31■■□□□ 1.32
TCRBV3S1A0A5B6 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
TCRBV3S1A0A5B6 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC23.31■■□□□ 1.32
TCRBV3S1A0A5B6 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
TCRBV3S1A0A5B6 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
TCRBV3S1A0A5B6 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
TCRBV3S1A0A5B6 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
TCRBV3S1A0A5B6 WHAMMP2-203ENST00000563942 1603 ntBASIC23.3■■□□□ 1.32
TCRBV3S1A0A5B6 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
TCRBV3S1A0A5B6 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC23.3■■□□□ 1.32
TCRBV3S1A0A5B6 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.3■■□□□ 1.32
TCRBV3S1A0A5B6 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
TCRBV3S1A0A5B6 EBPL-202ENST00000378268 680 ntTSL 3 BASIC23.3■■□□□ 1.32
TCRBV3S1A0A5B6 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
TCRBV3S1A0A5B6 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
TCRBV3S1A0A5B6 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
TCRBV3S1A0A5B6 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
TCRBV3S1A0A5B6 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
TCRBV3S1A0A5B6 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC23.29■■□□□ 1.32
TCRBV3S1A0A5B6 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
TCRBV3S1A0A5B6 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
TCRBV3S1A0A5B6 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
TCRBV3S1A0A5B6 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC23.27■■□□□ 1.32
TCRBV3S1A0A5B6 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
TCRBV3S1A0A5B6 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC23.27■■□□□ 1.32
TCRBV3S1A0A5B6 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
TCRBV3S1A0A5B6 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC23.27■■□□□ 1.32
TCRBV3S1A0A5B6 RARA-203ENST00000394086 2008 ntTSL 2 BASIC23.26■■□□□ 1.31
TCRBV3S1A0A5B6 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
TCRBV3S1A0A5B6 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC23.26■■□□□ 1.31
TCRBV3S1A0A5B6 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
TCRBV3S1A0A5B6 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
TCRBV3S1A0A5B6 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC23.26■■□□□ 1.31
TCRBV3S1A0A5B6 SETD8P1-201ENST00000623146 1180 ntBASIC23.26■■□□□ 1.31
TCRBV3S1A0A5B6 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC23.26■■□□□ 1.31
TCRBV3S1A0A5B6 AL391121.1-201ENST00000607967 1349 ntBASIC23.26■■□□□ 1.31
TCRBV3S1A0A5B6 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
TCRBV3S1A0A5B6 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
TCRBV3S1A0A5B6 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
TCRBV3S1A0A5B6 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC23.24■■□□□ 1.31
TCRBV3S1A0A5B6 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
TCRBV3S1A0A5B6 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
TCRBV3S1A0A5B6 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
TCRBV3S1A0A5B6 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
TCRBV3S1A0A5B6 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC23.23■■□□□ 1.31
TCRBV3S1A0A5B6 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
TCRBV3S1A0A5B6 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC23.23■■□□□ 1.31
TCRBV3S1A0A5B6 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
TCRBV3S1A0A5B6 AC142472.1-201ENST00000612013 1741 ntBASIC23.23■■□□□ 1.31
TCRBV3S1A0A5B6 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
TCRBV3S1A0A5B6 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
TCRBV3S1A0A5B6 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms