Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 WSB1-212ENST00000583096 834 ntTSL 37.56□□□□□ -1.23e-6■□□□□ 9.1
SMNDC1O75940 MYL6-221ENST00000552297 454 ntTSL 35.83□□□□□ -1.483e-6■□□□□ 9.1
SMNDC1O75940 WSB1-216ENST00000584114 479 ntTSL 33.56□□□□□ -1.843e-6■□□□□ 9.1
SMNDC1O75940 RACK1-207ENST00000503170 461 ntTSL 415.01□□□□□ -0.012e-83■□□□□ 9.1
SMNDC1O75940 RACK1-232ENST00000514318 581 ntTSL 314.59□□□□□ -0.072e-83■□□□□ 9.1
SMNDC1O75940 SNORD95-201ENST00000579879 68 ntBASIC5.18□□□□□ -1.582e-83■□□□□ 9.1
SMNDC1O75940 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.743e-8■□□□□ 9.1
SMNDC1O75940 C2orf42-212ENST00000470096 579 ntTSL 414.77□□□□□ -0.053e-8■□□□□ 9.1
SMNDC1O75940 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC14.57□□□□□ -0.083e-8■□□□□ 9.1
SMNDC1O75940 NPLOC4-207ENST00000572346 567 ntTSL 413.32□□□□□ -0.283e-8■□□□□ 9.1
SMNDC1O75940 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC12.92□□□□□ -0.343e-8■□□□□ 9.1
SMNDC1O75940 NPLOC4-218ENST00000574964 572 ntTSL 412.92□□□□□ -0.343e-8■□□□□ 9.1
SMNDC1O75940 TIA1-210ENST00000474809 915 ntTSL 511.71□□□□□ -0.533e-8■□□□□ 9.1
SMNDC1O75940 NPLOC4-214ENST00000573876 560 ntTSL 4 BASIC11.47□□□□□ -0.573e-8■□□□□ 9.1
SMNDC1O75940 NPLOC4-213ENST00000573519 654 ntTSL 1 (best)11.46□□□□□ -0.573e-8■□□□□ 9.1
SMNDC1O75940 TIA1-203ENST00000415783 4633 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.643e-8■□□□□ 9.1
SMNDC1O75940 TIA1-205ENST00000433529 4647 ntTSL 2 BASIC10.95□□□□□ -0.663e-8■□□□□ 9.1
SMNDC1O75940 NPLOC4-206ENST00000571714 676 ntTSL 510.06□□□□□ -0.83e-8■□□□□ 9.1
SMNDC1O75940 NPLOC4-210ENST00000572824 559 ntTSL 49.67□□□□□ -0.863e-8■□□□□ 9.1
SMNDC1O75940 NPLOC4-219ENST00000576713 571 ntTSL 59.67□□□□□ -0.863e-8■□□□□ 9.1
SMNDC1O75940 TIA1-207ENST00000454815 911 ntTSL 58.39□□□□□ -1.073e-8■□□□□ 9.1
SMNDC1O75940 TIA1-204ENST00000416149 821 ntTSL 1 (best) BASIC8.31□□□□□ -1.083e-8■□□□□ 9.1
SMNDC1O75940 TIA1-201ENST00000282574 3823 ntTSL 5 BASIC8.2□□□□□ -1.13e-8■□□□□ 9.1
SMNDC1O75940 NPLOC4-211ENST00000573212 564 ntTSL 47.83□□□□□ -1.163e-8■□□□□ 9.1
SMNDC1O75940 TIA1-211ENST00000477044 904 ntTSL 57.44□□□□□ -1.223e-8■□□□□ 9.1
SMNDC1O75940 TIA1-212ENST00000477415 510 ntTSL 27.13□□□□□ -1.273e-8■□□□□ 9.1
SMNDC1O75940 TIA1-218ENST00000496096 511 ntTSL 36.29□□□□□ -1.43e-8■□□□□ 9.1
SMNDC1O75940 TIA1-202ENST00000361692 543 ntTSL 54.61□□□□□ -1.673e-8■□□□□ 9.1
SMNDC1O75940 SNORA64-201ENST00000384674 134 ntBASIC1.94□□□□□ -2.11e-323■□□□□ 9
SMNDC1O75940 COL27A1-202ENST00000451716 2865 ntTSL 1 (best)12.44□□□□□ -0.421e-6■□□□□ 9
SMNDC1O75940 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC22.65■■□□□ 1.224e-10■□□□□ 9
SMNDC1O75940 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.232e-7■□□□□ 9
SMNDC1O75940 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC13.91□□□□□ -0.182e-7■□□□□ 9
SMNDC1O75940 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.282e-7■□□□□ 9
SMNDC1O75940 HECTD1-211ENST00000555915 775 ntTSL 57.86□□□□□ -1.152e-7■□□□□ 9
SMNDC1O75940 HECTD1-204ENST00000553957 4395 ntTSL 24.93□□□□□ -1.622e-7■□□□□ 9
SMNDC1O75940 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.053e-7■□□□□ 9
SMNDC1O75940 HNRNPM-214ENST00000600806 2373 ntTSL 519.27■□□□□ 0.673e-7■□□□□ 9
SMNDC1O75940 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.593e-7■□□□□ 9
SMNDC1O75940 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.553e-7■□□□□ 9
SMNDC1O75940 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.14■□□□□ 0.495e-8■□□□□ 9
SMNDC1O75940 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.324e-11■□□□□ 9
SMNDC1O75940 ATP1B3-204ENST00000466678 1708 ntTSL 312.78□□□□□ -0.364e-11■□□□□ 9
SMNDC1O75940 ADD1-209ENST00000503169 2394 ntTSL 29.01□□□□□ -0.974e-11■□□□□ 9
SMNDC1O75940 ATP1B3-207ENST00000484727 657 ntTSL 28□□□□□ -1.134e-11■□□□□ 9
SMNDC1O75940 ATP1B3-203ENST00000465172 1951 ntTSL 27.85□□□□□ -1.154e-11■□□□□ 9
SMNDC1O75940 ATP1B3-202ENST00000462082 837 ntTSL 3 BASIC7.68□□□□□ -1.184e-11■□□□□ 9
SMNDC1O75940 ATP1B3-208ENST00000486782 229 ntTSL 27.2□□□□□ -1.264e-11■□□□□ 9
SMNDC1O75940 ATP1B3-209ENST00000487199 421 ntTSL 34.81□□□□□ -1.644e-11■□□□□ 9
SMNDC1O75940 SNORA4-201ENST00000584302 138 ntBASIC2.17□□□□□ -2.061e-20■□□□□ 9
SMNDC1O75940 RTKN-205ENST00000464094 1266 ntTSL 1 (best)19.96■□□□□ 0.794e-10■□□□□ 9
SMNDC1O75940 RTKN-209ENST00000484453 820 ntTSL 1 (best)19.89■□□□□ 0.774e-10■□□□□ 9
SMNDC1O75940 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.51■□□□□ 0.714e-10■□□□□ 9
SMNDC1O75940 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.594e-10■□□□□ 9
SMNDC1O75940 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.14■□□□□ 0.494e-10■□□□□ 9
SMNDC1O75940 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.164e-10■□□□□ 9
SMNDC1O75940 RTKN-208ENST00000479256 564 ntTSL 514.29□□□□□ -0.124e-10■□□□□ 9
SMNDC1O75940 RTKN-207ENST00000472518 1105 ntTSL 1 (best)12.61□□□□□ -0.394e-10■□□□□ 9
SMNDC1O75940 RTKN-204ENST00000460968 842 ntTSL 212.25□□□□□ -0.454e-10■□□□□ 9
SMNDC1O75940 DPP4-204ENST00000434918 2674 ntTSL 1 (best)12.07□□□□□ -0.484e-10■□□□□ 9
SMNDC1O75940 DPP4-201ENST00000360534 3904 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.514e-10■□□□□ 9
SMNDC1O75940 CFI-207ENST00000618244 1345 ntTSL 5 BASIC8.14□□□□□ -1.114e-10■□□□□ 9
SMNDC1O75940 CFI-201ENST00000394634 2159 ntAPPRIS P3 TSL 1 (best) BASIC7.36□□□□□ -1.234e-10■□□□□ 9
SMNDC1O75940 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.274e-10■□□□□ 9
SMNDC1O75940 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC6.33□□□□□ -1.44e-10■□□□□ 9
SMNDC1O75940 CFI-203ENST00000504853 2368 ntTSL 26.32□□□□□ -1.44e-10■□□□□ 9
SMNDC1O75940 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.695e-6■□□□□ 9
SMNDC1O75940 SLC4A2-218ENST00000494125 782 ntTSL 221.83■■□□□ 1.099e-8■□□□□ 9
SMNDC1O75940 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.859e-8■□□□□ 9
SMNDC1O75940 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.229e-8■□□□□ 9
SMNDC1O75940 COPS6-206ENST00000468499 745 ntTSL 315.99■□□□□ 0.155e-6■□□□□ 9
SMNDC1O75940 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.159e-8■□□□□ 9
SMNDC1O75940 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.099e-8■□□□□ 9
SMNDC1O75940 SLC4A2-205ENST00000463414 793 ntTSL 315.5■□□□□ 0.079e-8■□□□□ 9
SMNDC1O75940 SLC3A2-213ENST00000539458 565 ntTSL 515.44■□□□□ 0.067e-21■□□□□ 9
SMNDC1O75940 SLC4A2-213ENST00000483786 571 ntTSL 415.17■□□□□ 0.029e-8■□□□□ 9
SMNDC1O75940 SLC4A2-201ENST00000392826 3947 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.099e-8■□□□□ 9
SMNDC1O75940 MAN2C1-218ENST00000563794 818 ntTSL 314.12□□□□□ -0.159e-8■□□□□ 9
SMNDC1O75940 SLC4A2-216ENST00000490898 702 ntTSL 314.01□□□□□ -0.179e-8■□□□□ 9
SMNDC1O75940 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.185e-6■□□□□ 9
SMNDC1O75940 SLC3A2-211ENST00000538084 741 ntTSL 313.37□□□□□ -0.277e-21■□□□□ 9
SMNDC1O75940 SLC4A2-204ENST00000461735 4387 ntTSL 1 (best) BASIC13.23□□□□□ -0.299e-8■□□□□ 9
SMNDC1O75940 ARID1A-210ENST00000636072 1128 ntTSL 513.14□□□□□ -0.319e-8■□□□□ 9
SMNDC1O75940 SLC4A2-212ENST00000482950 500 ntTSL 412.82□□□□□ -0.369e-8■□□□□ 9
SMNDC1O75940 DTL-201ENST00000366991 4573 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.429e-8■□□□□ 9
SMNDC1O75940 ARID1A-214ENST00000636794 1068 ntTSL 511.11□□□□□ -0.639e-8■□□□□ 9
SMNDC1O75940 DTL-206ENST00000542077 4471 ntTSL 2 BASIC9.56□□□□□ -0.889e-8■□□□□ 9
SMNDC1O75940 COPS6-208ENST00000474823 752 ntTSL 29.4□□□□□ -0.95e-6■□□□□ 9
SMNDC1O75940 SLC3A2-210ENST00000537839 584 ntTSL 59.39□□□□□ -0.917e-21■□□□□ 9
SMNDC1O75940 ARID1A-209ENST00000615191 3804 ntTSL 5 BASIC9.18□□□□□ -0.949e-8■□□□□ 9
SMNDC1O75940 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC8.07□□□□□ -1.129e-8■□□□□ 9
SMNDC1O75940 COPS6-204ENST00000426712 716 ntTSL 37.97□□□□□ -1.135e-6■□□□□ 9
SMNDC1O75940 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC7.22□□□□□ -1.259e-8■□□□□ 9
SMNDC1O75940 SLC3A2-218ENST00000541649 515 ntTSL 36.59□□□□□ -1.357e-21■□□□□ 9
SMNDC1O75940 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.369e-8■□□□□ 9
SMNDC1O75940 ATP11B-207ENST00000490303 2290 ntTSL 26.26□□□□□ -1.419e-8■□□□□ 9
SMNDC1O75940 DTL-203ENST00000475419 3662 ntTSL 26.07□□□□□ -1.449e-8■□□□□ 9
SMNDC1O75940 DTL-204ENST00000489149 815 ntTSL 25.48□□□□□ -1.539e-8■□□□□ 9
SMNDC1O75940 COPS6-209ENST00000483891 734 ntTSL 35.37□□□□□ -1.555e-6■□□□□ 9
SMNDC1O75940 ATP11B-210ENST00000498086 3259 ntTSL 53.43□□□□□ -1.869e-8■□□□□ 9
Retrieved 100 of 11,362 protein–RNA pairs in 316.7 ms