RNA–Protein interactions for RNA: ENST00000573212.5

NPLOC4-211, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 4

Gene NPLOC4, Length 564 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-211ENST00000573212 AEBP2Q6ZN18 517 aaPredicted RBP20.68■□□□□ 0.9
NPLOC4-211ENST00000573212 NISCHQ9Y2I1 1504 aa20.61■□□□□ 0.89
NPLOC4-211ENST00000573212 CHIC1Q5VXU3 224 aa20.55■□□□□ 0.88
NPLOC4-211ENST00000573212 ABCC9O60706 1549 aa18.76■□□□□ 0.59
NPLOC4-211ENST00000573212 CCDC180Q9P1Z9 1646 aa18.46■□□□□ 0.55
NPLOC4-211ENST00000573212 PHF23Q9BUL5 403 aaPredicted RBP18.2■□□□□ 0.5
NPLOC4-211ENST00000573212 DNAJC5BQ9UF47 199 aa17.94■□□□□ 0.46
NPLOC4-211ENST00000573212 RB1CC1Q8TDY2 1594 aa17.73■□□□□ 0.43
NPLOC4-211ENST00000573212 NACADO15069 1562 aa17.59■□□□□ 0.41
NPLOC4-211ENST00000573212 DCAF8L2P0C7V8 631 aa17.51■□□□□ 0.39
NPLOC4-211ENST00000573212 PABPN1Q86U42 306 aaKnown RBP eCLIP17.5■□□□□ 0.39
NPLOC4-211ENST00000573212 SENP3Q9H4L4 574 aaPredicted RBP17.35■□□□□ 0.37
NPLOC4-211ENST00000573212 MYO15BQ96JP2 1530 aa17.33■□□□□ 0.37
NPLOC4-211ENST00000573212 BICRAQ9NZM4 1560 aa17.27■□□□□ 0.35
NPLOC4-211ENST00000573212 UNC13AQ9UPW8 1703 aa17.22■□□□□ 0.35
NPLOC4-211ENST00000573212 DCAF1Q9Y4B6 1507 aa17.02■□□□□ 0.32
NPLOC4-211ENST00000573212 ZCCHC6Q5VYS8 1495 aaKnown RBP17.01■□□□□ 0.31
NPLOC4-211ENST00000573212 SHROOM4Q9ULL8 1493 aa16.99■□□□□ 0.31
NPLOC4-211ENST00000573212 CECR2Q9BXF3 1484 aa16.93■□□□□ 0.3
NPLOC4-211ENST00000573212 PLPPR3Q6T4P5 718 aa16.92■□□□□ 0.3
NPLOC4-211ENST00000573212 CC2D2AQ9P2K1 1620 aa16.9■□□□□ 0.3
NPLOC4-211ENST00000573212 EIF4G1Q04637 1599 aaKnown RBP16.83■□□□□ 0.28
NPLOC4-211ENST00000573212 SCRIBQ14160 1630 aa16.81■□□□□ 0.28
NPLOC4-211ENST00000573212 DNAJC5Q9H3Z4 198 aa16.61■□□□□ 0.25
NPLOC4-211ENST00000573212 NCAPD3P42695 1498 aa16.32■□□□□ 0.2
NPLOC4-211ENST00000573212 CUX2O14529 1486 aa16.26■□□□□ 0.19
NPLOC4-211ENST00000573212 ATAD2BQ9ULI0 1458 aa16.21■□□□□ 0.19
NPLOC4-211ENST00000573212 ERCC6Q03468 1493 aa16.16■□□□□ 0.18
NPLOC4-211ENST00000573212 FOXD1Q16676 465 aa16.13■□□□□ 0.17
NPLOC4-211ENST00000573212 HMGXB3Q12766 1538 aa16.09■□□□□ 0.17
NPLOC4-211ENST00000573212 SMARCA2P51531 1590 aa16.09■□□□□ 0.17
NPLOC4-211ENST00000573212 NESP48681 1621 aa16.06■□□□□ 0.16
NPLOC4-211ENST00000573212 SMARCA4P51532 1647 aa16.05■□□□□ 0.16
NPLOC4-211ENST00000573212 BAZ1BQ9UIG0 1483 aaKnown RBP15.97■□□□□ 0.15
NPLOC4-211ENST00000573212 BAZ1AQ9NRL2 1556 aaPredicted RBP15.96■□□□□ 0.14
NPLOC4-211ENST00000573212 PEG3Q9GZU2 1588 aa15.95■□□□□ 0.14
NPLOC4-211ENST00000573212 PPP6R1Q9UPN7 881 aa15.91■□□□□ 0.14
NPLOC4-211ENST00000573212 THOC2Q8NI27 1593 aaKnown RBP15.88■□□□□ 0.13
NPLOC4-211ENST00000573212 LAMC3Q9Y6N6 1575 aa15.88■□□□□ 0.13
NPLOC4-211ENST00000573212 MROH2BQ7Z745 1585 aa15.87■□□□□ 0.13
NPLOC4-211ENST00000573212 ADRA2BP18089 450 aa15.87■□□□□ 0.13
NPLOC4-211ENST00000573212 PDS5BQ9NTI5 1447 aa15.85■□□□□ 0.13
NPLOC4-211ENST00000573212 CADPSQ9ULU8 1353 aa15.81■□□□□ 0.12
NPLOC4-211ENST00000573212 KIF21AQ7Z4S6 1674 aa15.73■□□□□ 0.11
NPLOC4-211ENST00000573212 TRIM41Q8WV44 630 aa15.69■□□□□ 0.1
NPLOC4-211ENST00000573212 MRC2Q9UBG0 1479 aa15.69■□□□□ 0.1
NPLOC4-211ENST00000573212 WDR62O43379 1518 aa15.65■□□□□ 0.1
NPLOC4-211ENST00000573212 WIZO95785 1651 aa15.6■□□□□ 0.09
NPLOC4-211ENST00000573212 KCNA4P22459 653 aa15.6■□□□□ 0.09
NPLOC4-211ENST00000573212 CFTRP13569 1480 aa15.57■□□□□ 0.08
NPLOC4-211ENST00000573212 FANCD2Q9BXW9 1451 aa15.57■□□□□ 0.08
NPLOC4-211ENST00000573212 CEP164Q9UPV0 1460 aa15.57■□□□□ 0.08
NPLOC4-211ENST00000573212 OSCARQ8IYS5 282 aa15.56■□□□□ 0.08
NPLOC4-211ENST00000573212 RSF1Q96T23 1441 aaPredicted RBP15.51■□□□□ 0.07
NPLOC4-211ENST00000573212 URB2Q14146 1524 aaKnown RBP15.46■□□□□ 0.07
NPLOC4-211ENST00000573212 EHMT2Q96KQ7 1210 aa15.44■□□□□ 0.06
NPLOC4-211ENST00000573212 TOP2AP11388 1531 aaKnown RBP15.41■□□□□ 0.06
NPLOC4-211ENST00000573212 CCDC88BA6NC98 1476 aa15.31■□□□□ 0.04
NPLOC4-211ENST00000573212 IFT140Q96RY7 1462 aa15.31■□□□□ 0.04
NPLOC4-211ENST00000573212 ZNF608Q9ULD9 1512 aaPredicted RBP15.31■□□□□ 0.04
NPLOC4-211ENST00000573212 RIMBP3CA6NJZ7 1639 aa15.25■□□□□ 0.03
NPLOC4-211ENST00000573212 RIMBP3BA6NNM3 1639 aa15.25■□□□□ 0.03
NPLOC4-211ENST00000573212 RIMBP3Q9UFD9 1639 aa15.25■□□□□ 0.03
NPLOC4-211ENST00000573212 PIAS4Q8N2W9 510 aaPredicted RBP15.25■□□□□ 0.03
NPLOC4-211ENST00000573212 TOPBP1Q92547 1522 aa15.25■□□□□ 0.03
NPLOC4-211ENST00000573212 ABCC8Q09428 1581 aa15.22■□□□□ 0.03
NPLOC4-211ENST00000573212 ARHGEF11O15085 1522 aa15.22■□□□□ 0.03
NPLOC4-211ENST00000573212 CYB5RLQ6IPT4 315 aa15.2■□□□□ 0.02
NPLOC4-211ENST00000573212 AQRO60306 1485 aaKnown RBP eCLIP15.17■□□□□ 0.023e-6■■□□□ 12.9
NPLOC4-211ENST00000573212 PRDM2Q13029 1718 aa15.17■□□□□ 0.02
NPLOC4-211ENST00000573212 DNMBPQ6XZF7 1577 aa15.14■□□□□ 0.01
NPLOC4-211ENST00000573212 EIF4G3O43432 1585 aaKnown RBP15.11■□□□□ 0.01
NPLOC4-211ENST00000573212 TARBP1Q13395 1621 aaKnown RBP15.11■□□□□ 0.01
NPLOC4-211ENST00000573212 POLA1P09884 1462 aaPredicted RBP15.09■□□□□ 0.01
NPLOC4-211ENST00000573212 FBLN2P98095 1184 aa15.09■□□□□ 0.01
NPLOC4-211ENST00000573212 ARAP1Q96P48 1450 aa15.07■□□□□ 0
NPLOC4-211ENST00000573212 TRHP20396 242 aaPredicted RBP15.05■□□□□ -0
NPLOC4-211ENST00000573212 TDRD9Q8NDG6 1382 aaKnown RBP15.05■□□□□ -0
NPLOC4-211ENST00000573212 SOGA1O94964 1423 aa15.05■□□□□ -0
NPLOC4-211ENST00000573212 RAD54L2Q9Y4B4 1467 aa15.05■□□□□ -0
NPLOC4-211ENST00000573212 PPP4R3CPQ6ZMV5 832 aa15.01□□□□□ -0.01
NPLOC4-211ENST00000573212 CHD1O14646 1710 aa15□□□□□ -0.01
NPLOC4-211ENST00000573212 CHMP7Q8WUX9 453 aaPredicted RBP14.97□□□□□ -0.01
NPLOC4-211ENST00000573212 CSRNP3Q8WYN3 585 aa14.97□□□□□ -0.01
NPLOC4-211ENST00000573212 SLC4A1APQ9BWU0 796 aaKnown RBP14.97□□□□□ -0.01
NPLOC4-211ENST00000573212 SNAPC4Q5SXM2 1469 aa14.95□□□□□ -0.02
NPLOC4-211ENST00000573212 FGD5Q6ZNL6 1462 aa14.94□□□□□ -0.02
NPLOC4-211ENST00000573212 CLASP1Q7Z460 1538 aa14.93□□□□□ -0.02
NPLOC4-211ENST00000573212 WDR97A6NE52 1622 aa14.92□□□□□ -0.02
NPLOC4-211ENST00000573212 GRIN2BQ13224 1484 aa14.91□□□□□ -0.02
NPLOC4-211ENST00000573212 MAGI1Q96QZ7 1491 aaPredicted RBP14.91□□□□□ -0.02
NPLOC4-211ENST00000573212 CUX1P39880 1505 aa14.9□□□□□ -0.02
NPLOC4-211ENST00000573212 SYNJ2O15056 1496 aa14.88□□□□□ -0.03
NPLOC4-211ENST00000573212 SYNJ1O43426 1573 aa14.86□□□□□ -0.03
NPLOC4-211ENST00000573212 GAPVD1Q14C86 1478 aa14.82□□□□□ -0.04
NPLOC4-211ENST00000573212 NCBP3Q53F19 620 aaKnown RBP14.82□□□□□ -0.04
NPLOC4-211ENST00000573212 ABCA10Q8WWZ4 1543 aa14.79□□□□□ -0.04
NPLOC4-211ENST00000573212 ABCA5Q8WWZ7 1642 aa14.72□□□□□ -0.05
NPLOC4-211ENST00000573212 GRIN2AQ12879 1464 aa14.7□□□□□ -0.06
NPLOC4-211ENST00000573212 NUP160Q12769 1436 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms