RNA–Protein interactions for RNA: ENST00000572760.5

NPLOC4-209, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 1 (best) BASIC

Gene NPLOC4, Length 946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-209ENST00000572760 NISCHQ9Y2I1 1504 aa34.43■■■■□ 3.1
NPLOC4-209ENST00000572760 CCDC180Q9P1Z9 1646 aa30.51■■■□□ 2.47
NPLOC4-209ENST00000572760 ABCC9O60706 1549 aa29.53■■■□□ 2.32
NPLOC4-209ENST00000572760 DCAF8L2P0C7V8 631 aa28.79■■■□□ 2.2
NPLOC4-209ENST00000572760 ZCCHC6Q5VYS8 1495 aaKnown RBP28.74■■■□□ 2.19
NPLOC4-209ENST00000572760 NACADO15069 1562 aa28.58■■■□□ 2.17
NPLOC4-209ENST00000572760 RB1CC1Q8TDY2 1594 aa28.56■■■□□ 2.16
NPLOC4-209ENST00000572760 DCAF1Q9Y4B6 1507 aa28.48■■■□□ 2.15
NPLOC4-209ENST00000572760 MYO15BQ96JP2 1530 aa28.45■■■□□ 2.15
NPLOC4-209ENST00000572760 UNC13AQ9UPW8 1703 aa27.96■■■□□ 2.07
NPLOC4-209ENST00000572760 SCRIBQ14160 1630 aa27.89■■■□□ 2.05
NPLOC4-209ENST00000572760 PABPN1Q86U42 306 aaKnown RBP eCLIP27.66■■■□□ 2.02
NPLOC4-209ENST00000572760 BICRAQ9NZM4 1560 aa27.61■■■□□ 2.01
NPLOC4-209ENST00000572760 SHROOM4Q9ULL8 1493 aa27.5■■□□□ 1.99
NPLOC4-209ENST00000572760 EIF4G1Q04637 1599 aaKnown RBP26.89■■□□□ 1.9
NPLOC4-209ENST00000572760 CECR2Q9BXF3 1484 aa26.78■■□□□ 1.88
NPLOC4-209ENST00000572760 CC2D2AQ9P2K1 1620 aa26.72■■□□□ 1.87
NPLOC4-209ENST00000572760 DNAJC5BQ9UF47 199 aa26.72■■□□□ 1.87
NPLOC4-209ENST00000572760 BAZ1AQ9NRL2 1556 aaPredicted RBP26.7■■□□□ 1.86
NPLOC4-209ENST00000572760 SMARCA4P51532 1647 aa26.68■■□□□ 1.86
NPLOC4-209ENST00000572760 MROH2BQ7Z745 1585 aa26.54■■□□□ 1.84
NPLOC4-209ENST00000572760 SMARCA2P51531 1590 aa26.43■■□□□ 1.82
NPLOC4-209ENST00000572760 ATAD2BQ9ULI0 1458 aa26.41■■□□□ 1.82
NPLOC4-209ENST00000572760 PEG3Q9GZU2 1588 aa26.36■■□□□ 1.81
NPLOC4-209ENST00000572760 RSF1Q96T23 1441 aaPredicted RBP26.35■■□□□ 1.81
NPLOC4-209ENST00000572760 WIZO95785 1651 aa26.34■■□□□ 1.81
NPLOC4-209ENST00000572760 NCAPD3P42695 1498 aa26.32■■□□□ 1.8
NPLOC4-209ENST00000572760 BAZ1BQ9UIG0 1483 aaKnown RBP26.26■■□□□ 1.79
NPLOC4-209ENST00000572760 HMGXB3Q12766 1538 aa26.24■■□□□ 1.79
NPLOC4-209ENST00000572760 SUPT5HO00267 1087 aaKnown RBP26.08■■□□□ 1.77
NPLOC4-209ENST00000572760 TOP2AP11388 1531 aaKnown RBP26.04■■□□□ 1.76
NPLOC4-209ENST00000572760 CCDC88BA6NC98 1476 aa25.72■■□□□ 1.71
NPLOC4-209ENST00000572760 LAMC3Q9Y6N6 1575 aa25.63■■□□□ 1.69
NPLOC4-209ENST00000572760 NESP48681 1621 aa25.63■■□□□ 1.69
NPLOC4-209ENST00000572760 CADPSQ9ULU8 1353 aa25.6■■□□□ 1.69
NPLOC4-209ENST00000572760 CFTRP13569 1480 aa25.5■■□□□ 1.67
NPLOC4-209ENST00000572760 PRDM2Q13029 1718 aa25.48■■□□□ 1.67
NPLOC4-209ENST00000572760 ERCC6Q03468 1493 aa25.47■■□□□ 1.67
NPLOC4-209ENST00000572760 PDS5BQ9NTI5 1447 aa25.46■■□□□ 1.67
NPLOC4-209ENST00000572760 KIF21AQ7Z4S6 1674 aa25.4■■□□□ 1.66
NPLOC4-209ENST00000572760 FANCD2Q9BXW9 1451 aa25.33■■□□□ 1.65
NPLOC4-209ENST00000572760 CEP164Q9UPV0 1460 aa25.28■■□□□ 1.64
NPLOC4-209ENST00000572760 MRC2Q9UBG0 1479 aa25.16■■□□□ 1.62
NPLOC4-209ENST00000572760 THOC2Q8NI27 1593 aaKnown RBP25.16■■□□□ 1.62
NPLOC4-209ENST00000572760 WDR62O43379 1518 aa25.04■■□□□ 1.6
NPLOC4-209ENST00000572760 URB2Q14146 1524 aaKnown RBP25.03■■□□□ 1.6
NPLOC4-209ENST00000572760 ABCC8Q09428 1581 aa25.01■■□□□ 1.59
NPLOC4-209ENST00000572760 CUX2O14529 1486 aa25■■□□□ 1.59
NPLOC4-209ENST00000572760 DNMBPQ6XZF7 1577 aa24.97■■□□□ 1.59
NPLOC4-209ENST00000572760 TOPBP1Q92547 1522 aa24.96■■□□□ 1.59
NPLOC4-209ENST00000572760 WRNQ14191 1432 aaPredicted RBP eCLIP24.88■■□□□ 1.57
NPLOC4-209ENST00000572760 CUX1P39880 1505 aa24.88■■□□□ 1.57
NPLOC4-209ENST00000572760 BIVM-ERCC5R4GMW8 1640 aa24.79■■□□□ 1.56
NPLOC4-209ENST00000572760 SYNJ1O43426 1573 aa24.79■■□□□ 1.56
NPLOC4-209ENST00000572760 TOP2BQ02880 1626 aa24.79■■□□□ 1.56
NPLOC4-209ENST00000572760 FGD5Q6ZNL6 1462 aa24.77■■□□□ 1.56
NPLOC4-209ENST00000572760 POLA1P09884 1462 aaPredicted RBP24.76■■□□□ 1.55
NPLOC4-209ENST00000572760 IFT140Q96RY7 1462 aa24.72■■□□□ 1.55
NPLOC4-209ENST00000572760 SOGA1O94964 1423 aa24.69■■□□□ 1.54
NPLOC4-209ENST00000572760 RAD54L2Q9Y4B4 1467 aa24.67■■□□□ 1.54
NPLOC4-209ENST00000572760 TARBP1Q13395 1621 aaKnown RBP24.64■■□□□ 1.54
NPLOC4-209ENST00000572760 TRIM41Q8WV44 630 aa24.6■■□□□ 1.53
NPLOC4-209ENST00000572760 ZNF608Q9ULD9 1512 aaPredicted RBP24.56■■□□□ 1.52
NPLOC4-209ENST00000572760 WDR97A6NE52 1622 aa24.55■■□□□ 1.52
NPLOC4-209ENST00000572760 ABCA10Q8WWZ4 1543 aa24.52■■□□□ 1.52
NPLOC4-209ENST00000572760 EIF4G3O43432 1585 aaKnown RBP24.51■■□□□ 1.51
NPLOC4-209ENST00000572760 TDRD9Q8NDG6 1382 aaKnown RBP24.51■■□□□ 1.51
NPLOC4-209ENST00000572760 AQRO60306 1485 aaKnown RBP eCLIP24.49■■□□□ 1.512e-6■■□□□ 13.2
NPLOC4-209ENST00000572760 CHIC1Q5VXU3 224 aa24.47■■□□□ 1.51
NPLOC4-209ENST00000572760 GAPVD1Q14C86 1478 aa24.42■■□□□ 1.5
NPLOC4-209ENST00000572760 ABCA5Q8WWZ7 1642 aa24.4■■□□□ 1.5
NPLOC4-209ENST00000572760 PBRM1Q86U86 1689 aa24.4■■□□□ 1.5
NPLOC4-209ENST00000572760 GRIN2BQ13224 1484 aa24.36■■□□□ 1.49
NPLOC4-209ENST00000572760 KIF27Q86VH2 1401 aa24.35■■□□□ 1.49
NPLOC4-209ENST00000572760 SNAPC4Q5SXM2 1469 aa24.27■■□□□ 1.48
NPLOC4-209ENST00000572760 ERICH3Q5RHP9 1530 aa24.25■■□□□ 1.47
NPLOC4-209ENST00000572760 MAGI1Q96QZ7 1491 aaPredicted RBP24.25■■□□□ 1.47
NPLOC4-209ENST00000572760 FBLN2P98095 1184 aa24.22■■□□□ 1.47
NPLOC4-209ENST00000572760 CHD1O14646 1710 aa24.21■■□□□ 1.47
NPLOC4-209ENST00000572760 RUSC2Q8N2Y8 1516 aa24.2■■□□□ 1.47
NPLOC4-209ENST00000572760 CHMP7Q8WUX9 453 aaPredicted RBP24.18■■□□□ 1.46
NPLOC4-209ENST00000572760 ADAMTS12P58397 1594 aa24.16■■□□□ 1.46
NPLOC4-209ENST00000572760 IGF1RP08069 1367 aa24.16■■□□□ 1.46
NPLOC4-209ENST00000572760 SYNJ2O15056 1496 aa24.15■■□□□ 1.46
NPLOC4-209ENST00000572760 CUL7Q14999 1698 aa24.15■■□□□ 1.46
NPLOC4-209ENST00000572760 FHAD1B1AJZ9 1412 aa24.13■■□□□ 1.45
NPLOC4-209ENST00000572760 EEA1Q15075 1411 aa24.11■■□□□ 1.45
NPLOC4-209ENST00000572760 FAM9AQ8IZU1 332 aaPredicted RBP24.11■■□□□ 1.45
NPLOC4-209ENST00000572760 OSCARQ8IYS5 282 aa24.08■■□□□ 1.45
NPLOC4-209ENST00000572760 CARMIL1Q5VZK9 1371 aa24.07■■□□□ 1.44
NPLOC4-209ENST00000572760 CSRNP3Q8WYN3 585 aa24.05■■□□□ 1.44
NPLOC4-209ENST00000572760 GRIN2AQ12879 1464 aa24.04■■□□□ 1.44
NPLOC4-209ENST00000572760 RAPGEF2Q9Y4G8 1499 aa23.96■■□□□ 1.43
NPLOC4-209ENST00000572760 PRXQ9BXM0 1461 aa23.91■■□□□ 1.42
NPLOC4-209ENST00000572760 CEP170Q5SW79 1584 aa23.9■■□□□ 1.42
NPLOC4-209ENST00000572760 NUP160Q12769 1436 aa23.88■■□□□ 1.41
NPLOC4-209ENST00000572760 KIF21BO75037 1637 aa23.84■■□□□ 1.41
NPLOC4-209ENST00000572760 CLASP1Q7Z460 1538 aa23.84■■□□□ 1.41
NPLOC4-209ENST00000572760 DNAJC5Q9H3Z4 198 aa23.83■■□□□ 1.41
NPLOC4-209ENST00000572760 EHMT2Q96KQ7 1210 aa23.8■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms