RNA–Protein interactions for RNA: ENST00000576713.6

NPLOC4-219, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 5

Gene NPLOC4, Length 571 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-219ENST00000576713 AEBP2Q6ZN18 517 aaPredicted RBP28.21■■■□□ 2.11
NPLOC4-219ENST00000576713 CHIC1Q5VXU3 224 aa27.8■■■□□ 2.04
NPLOC4-219ENST00000576713 PHF23Q9BUL5 403 aaPredicted RBP24.5■■□□□ 1.51
NPLOC4-219ENST00000576713 SENP3Q9H4L4 574 aaPredicted RBP23.85■■□□□ 1.41
NPLOC4-219ENST00000576713 NISCHQ9Y2I1 1504 aa23.02■■□□□ 1.28
NPLOC4-219ENST00000576713 PLPPR3Q6T4P5 718 aa22.68■■□□□ 1.22
NPLOC4-219ENST00000576713 FOXD1Q16676 465 aa22.13■■□□□ 1.13
NPLOC4-219ENST00000576713 PPP6R1Q9UPN7 881 aa21.53■■□□□ 1.04
NPLOC4-219ENST00000576713 ADRA2BP18089 450 aa21.51■■□□□ 1.03
NPLOC4-219ENST00000576713 PIAS4Q8N2W9 510 aaPredicted RBP20.91■□□□□ 0.94
NPLOC4-219ENST00000576713 CCDC180Q9P1Z9 1646 aa20.38■□□□□ 0.85
NPLOC4-219ENST00000576713 MSH5O43196 834 aa20.27■□□□□ 0.84
NPLOC4-219ENST00000576713 PPP4R3CPQ6ZMV5 832 aa20.03■□□□□ 0.8
NPLOC4-219ENST00000576713 ABCC9O60706 1549 aa19.93■□□□□ 0.78
NPLOC4-219ENST00000576713 KCNA4P22459 653 aa19.88■□□□□ 0.77
NPLOC4-219ENST00000576713 SCAF1Q9H7N4 1312 aaKnown RBP19.65■□□□□ 0.74
NPLOC4-219ENST00000576713 NCBP3Q53F19 620 aaKnown RBP19.56■□□□□ 0.72
NPLOC4-219ENST00000576713 MAPK8IP2Q13387 824 aaPredicted RBP19.44■□□□□ 0.7
NPLOC4-219ENST00000576713 CNKSR2Q8WXI2 1034 aa19.4■□□□□ 0.7
NPLOC4-219ENST00000576713 NPM3O75607 178 aaKnown RBP19.3■□□□□ 0.68
NPLOC4-219ENST00000576713 ZCCHC6Q5VYS8 1495 aaKnown RBP19.21■□□□□ 0.67
NPLOC4-219ENST00000576713 DCAF8L2P0C7V8 631 aa19.13■□□□□ 0.65
NPLOC4-219ENST00000576713 RB1CC1Q8TDY2 1594 aa19.12■□□□□ 0.65
NPLOC4-219ENST00000576713 NACADO15069 1562 aa19.11■□□□□ 0.65
NPLOC4-219ENST00000576713 DMRT2Q9Y5R5 561 aa19.1■□□□□ 0.65
NPLOC4-219ENST00000576713 MYO15BQ96JP2 1530 aa19.02■□□□□ 0.64
NPLOC4-219ENST00000576713 DCAF1Q9Y4B6 1507 aa19■□□□□ 0.63
NPLOC4-219ENST00000576713 SLC4A1APQ9BWU0 796 aaKnown RBP18.96■□□□□ 0.63
NPLOC4-219ENST00000576713 RNF216Q9NWF9 866 aaPredicted RBP18.96■□□□□ 0.63
NPLOC4-219ENST00000576713 HOXD11P31277 338 aaPredicted RBP18.82■□□□□ 0.6
NPLOC4-219ENST00000576713 UNC13AQ9UPW8 1703 aa18.78■□□□□ 0.6
NPLOC4-219ENST00000576713 EHMT2Q96KQ7 1210 aa18.72■□□□□ 0.59
NPLOC4-219ENST00000576713 DNAJC5BQ9UF47 199 aa18.72■□□□□ 0.59
NPLOC4-219ENST00000576713 SCRIBQ14160 1630 aa18.67■□□□□ 0.58
NPLOC4-219ENST00000576713 BICRAQ9NZM4 1560 aa18.67■□□□□ 0.58
NPLOC4-219ENST00000576713 PABPN1Q86U42 306 aaKnown RBP eCLIP18.64■□□□□ 0.57
NPLOC4-219ENST00000576713 CSRNP3Q8WYN3 585 aa18.42■□□□□ 0.54
NPLOC4-219ENST00000576713 ZBTB22O15209 634 aa18.31■□□□□ 0.52
NPLOC4-219ENST00000576713 SHROOM4Q9ULL8 1493 aa18.31■□□□□ 0.52
NPLOC4-219ENST00000576713 DCAF8L1A6NGE4 600 aa18.22■□□□□ 0.51
NPLOC4-219ENST00000576713 FOXD4L1Q9NU39 408 aa18.2■□□□□ 0.5
NPLOC4-219ENST00000576713 SLC4A2P04920 1241 aa18.18■□□□□ 0.5
NPLOC4-219ENST00000576713 EIF4G1Q04637 1599 aaKnown RBP18.11■□□□□ 0.49
NPLOC4-219ENST00000576713 CC2D2AQ9P2K1 1620 aa18.01■□□□□ 0.47
NPLOC4-219ENST00000576713 POTEDQ86YR6 584 aa18■□□□□ 0.47
NPLOC4-219ENST00000576713 CECR2Q9BXF3 1484 aa18■□□□□ 0.47
NPLOC4-219ENST00000576713 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.91■□□□□ 0.467e-8■■■□□ 16.5
NPLOC4-219ENST00000576713 SMARCA4P51532 1647 aa17.85■□□□□ 0.45
NPLOC4-219ENST00000576713 MYCNP04198 464 aaPredicted RBP17.81■□□□□ 0.44
NPLOC4-219ENST00000576713 MROH2BQ7Z745 1585 aa17.79■□□□□ 0.44
NPLOC4-219ENST00000576713 BAZ1AQ9NRL2 1556 aaPredicted RBP17.79■□□□□ 0.44
NPLOC4-219ENST00000576713 ATAD2BQ9ULI0 1458 aa17.73■□□□□ 0.43
NPLOC4-219ENST00000576713 U3KPZ7 1027 aaPredicted RBP17.67■□□□□ 0.42
NPLOC4-219ENST00000576713 NCAPD3P42695 1498 aa17.67■□□□□ 0.42
NPLOC4-219ENST00000576713 PEG3Q9GZU2 1588 aa17.66■□□□□ 0.42
NPLOC4-219ENST00000576713 SMARCA2P51531 1590 aa17.64■□□□□ 0.41
NPLOC4-219ENST00000576713 WIZO95785 1651 aa17.6■□□□□ 0.41
NPLOC4-219ENST00000576713 HMGXB3Q12766 1538 aa17.59■□□□□ 0.41
NPLOC4-219ENST00000576713 RSF1Q96T23 1441 aaPredicted RBP17.59■□□□□ 0.41
NPLOC4-219ENST00000576713 BAZ1BQ9UIG0 1483 aaKnown RBP17.55■□□□□ 0.4
NPLOC4-219ENST00000576713 ATXN8OSP0DMR3 200 aa17.54■□□□□ 0.4
NPLOC4-219ENST00000576713 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.51■□□□□ 0.39
NPLOC4-219ENST00000576713 HNRNPUL2Q1KMD3 747 aaKnown RBP17.51■□□□□ 0.39
NPLOC4-219ENST00000576713 SAMD1Q6SPF0 538 aaPredicted RBP17.47■□□□□ 0.39
NPLOC4-219ENST00000576713 RNF39Q9H2S5 420 aa17.42■□□□□ 0.38
NPLOC4-219ENST00000576713 TOP2AP11388 1531 aaKnown RBP17.37■□□□□ 0.37
NPLOC4-219ENST00000576713 ATF5Q9Y2D1 282 aaPredicted RBP17.34■□□□□ 0.37
NPLOC4-219ENST00000576713 NESP48681 1621 aa17.32■□□□□ 0.36
NPLOC4-219ENST00000576713 APLP2Q06481 763 aa17.25■□□□□ 0.35
NPLOC4-219ENST00000576713 C1QBPQ07021 282 aaKnown RBP17.22■□□□□ 0.35
NPLOC4-219ENST00000576713 CCDC88BA6NC98 1476 aa17.19■□□□□ 0.34
NPLOC4-219ENST00000576713 SUPT5HO00267 1087 aaKnown RBP17.17■□□□□ 0.34
NPLOC4-219ENST00000576713 LAMC3Q9Y6N6 1575 aa17.17■□□□□ 0.34
NPLOC4-219ENST00000576713 CADPSQ9ULU8 1353 aa17.15■□□□□ 0.34
NPLOC4-219ENST00000576713 ERCC6Q03468 1493 aa17.12■□□□□ 0.33
NPLOC4-219ENST00000576713 SPINK5Q9NQ38 1064 aaPredicted RBP17.1■□□□□ 0.33
NPLOC4-219ENST00000576713 CFTRP13569 1480 aa17.09■□□□□ 0.33
NPLOC4-219ENST00000576713 KIF21AQ7Z4S6 1674 aa17.07■□□□□ 0.32
NPLOC4-219ENST00000576713 CUX2O14529 1486 aa17.05■□□□□ 0.32
NPLOC4-219ENST00000576713 ZNF219Q9P2Y4 722 aaPredicted RBP17.03■□□□□ 0.32
NPLOC4-219ENST00000576713 PDS5BQ9NTI5 1447 aa17.02■□□□□ 0.31
NPLOC4-219ENST00000576713 THOC2Q8NI27 1593 aaKnown RBP17.01■□□□□ 0.31
NPLOC4-219ENST00000576713 CAPN15O75808 1086 aa16.99■□□□□ 0.31
NPLOC4-219ENST00000576713 TRHP20396 242 aaPredicted RBP16.98■□□□□ 0.31
NPLOC4-219ENST00000576713 FANCD2Q9BXW9 1451 aa16.98■□□□□ 0.31
NPLOC4-219ENST00000576713 PRDM2Q13029 1718 aa16.93■□□□□ 0.3
NPLOC4-219ENST00000576713 CEP164Q9UPV0 1460 aa16.93■□□□□ 0.3
NPLOC4-219ENST00000576713 MRC2Q9UBG0 1479 aa16.89■□□□□ 0.29
NPLOC4-219ENST00000576713 WDR62O43379 1518 aa16.86■□□□□ 0.29
NPLOC4-219ENST00000576713 URB2Q14146 1524 aaKnown RBP16.86■□□□□ 0.29
NPLOC4-219ENST00000576713 POLA2Q14181 598 aa16.79■□□□□ 0.28
NPLOC4-219ENST00000576713 CACNB1Q02641 598 aaPredicted RBP16.75■□□□□ 0.27
NPLOC4-219ENST00000576713 DNAJC5Q9H3Z4 198 aa16.73■□□□□ 0.27
NPLOC4-219ENST00000576713 TOPBP1Q92547 1522 aa16.73■□□□□ 0.27
NPLOC4-219ENST00000576713 DNMBPQ6XZF7 1577 aa16.7■□□□□ 0.26
NPLOC4-219ENST00000576713 ABCB7O75027 752 aa16.7■□□□□ 0.26
NPLOC4-219ENST00000576713 CUX1P39880 1505 aa16.68■□□□□ 0.26
NPLOC4-219ENST00000576713 DSG3P32926 999 aa16.67■□□□□ 0.26
NPLOC4-219ENST00000576713 ABCC8Q09428 1581 aa16.63■□□□□ 0.25
NPLOC4-219ENST00000576713 MKRN4PQ13434 485 aaPredicted RBP16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms