RNA–Protein interactions for RNA: ENST00000573519.5

NPLOC4-213, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 1 (best)

Gene NPLOC4, Length 654 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-213ENST00000573519 NISCHQ9Y2I1 1504 aa31.24■■■□□ 2.59
NPLOC4-213ENST00000573519 CCDC180Q9P1Z9 1646 aa27.9■■■□□ 2.06
NPLOC4-213ENST00000573519 ABCC9O60706 1549 aa27.68■■■□□ 2.02
NPLOC4-213ENST00000573519 RB1CC1Q8TDY2 1594 aa26.45■■□□□ 1.82
NPLOC4-213ENST00000573519 DCAF8L2P0C7V8 631 aa26.38■■□□□ 1.81
NPLOC4-213ENST00000573519 NACADO15069 1562 aa26.31■■□□□ 1.8
NPLOC4-213ENST00000573519 MYO15BQ96JP2 1530 aa25.99■■□□□ 1.75
NPLOC4-213ENST00000573519 ZCCHC6Q5VYS8 1495 aaKnown RBP25.96■■□□□ 1.75
NPLOC4-213ENST00000573519 PABPN1Q86U42 306 aaKnown RBP eCLIP25.83■■□□□ 1.73
NPLOC4-213ENST00000573519 UNC13AQ9UPW8 1703 aa25.81■■□□□ 1.72
NPLOC4-213ENST00000573519 DCAF1Q9Y4B6 1507 aa25.78■■□□□ 1.72
NPLOC4-213ENST00000573519 DNAJC5BQ9UF47 199 aa25.65■■□□□ 1.7
NPLOC4-213ENST00000573519 BICRAQ9NZM4 1560 aa25.62■■□□□ 1.69
NPLOC4-213ENST00000573519 SCRIBQ14160 1630 aa25.51■■□□□ 1.67
NPLOC4-213ENST00000573519 SHROOM4Q9ULL8 1493 aa25.29■■□□□ 1.64
NPLOC4-213ENST00000573519 EIF4G1Q04637 1599 aaKnown RBP25.01■■□□□ 1.59
NPLOC4-213ENST00000573519 CC2D2AQ9P2K1 1620 aa24.99■■□□□ 1.59
NPLOC4-213ENST00000573519 CECR2Q9BXF3 1484 aa24.89■■□□□ 1.57
NPLOC4-213ENST00000573519 SMARCA4P51532 1647 aa24.32■■□□□ 1.48
NPLOC4-213ENST00000573519 NCAPD3P42695 1498 aa24.27■■□□□ 1.48
NPLOC4-213ENST00000573519 ATAD2BQ9ULI0 1458 aa24.26■■□□□ 1.47
NPLOC4-213ENST00000573519 BAZ1AQ9NRL2 1556 aaPredicted RBP24.25■■□□□ 1.47
NPLOC4-213ENST00000573519 SMARCA2P51531 1590 aa24.22■■□□□ 1.47
NPLOC4-213ENST00000573519 HMGXB3Q12766 1538 aa24.13■■□□□ 1.45
NPLOC4-213ENST00000573519 MROH2BQ7Z745 1585 aa24.09■■□□□ 1.45
NPLOC4-213ENST00000573519 BAZ1BQ9UIG0 1483 aaKnown RBP24.08■■□□□ 1.45
NPLOC4-213ENST00000573519 PEG3Q9GZU2 1588 aa24.03■■□□□ 1.44
NPLOC4-213ENST00000573519 ERCC6Q03468 1493 aa23.9■■□□□ 1.42
NPLOC4-213ENST00000573519 NESP48681 1621 aa23.84■■□□□ 1.41
NPLOC4-213ENST00000573519 WIZO95785 1651 aa23.84■■□□□ 1.41
NPLOC4-213ENST00000573519 LAMC3Q9Y6N6 1575 aa23.7■■□□□ 1.38
NPLOC4-213ENST00000573519 RSF1Q96T23 1441 aaPredicted RBP23.69■■□□□ 1.38
NPLOC4-213ENST00000573519 CUX2O14529 1486 aa23.68■■□□□ 1.38
NPLOC4-213ENST00000573519 CADPSQ9ULU8 1353 aa23.58■■□□□ 1.37
NPLOC4-213ENST00000573519 PDS5BQ9NTI5 1447 aa23.58■■□□□ 1.36
NPLOC4-213ENST00000573519 KIF21AQ7Z4S6 1674 aa23.54■■□□□ 1.36
NPLOC4-213ENST00000573519 TOP2AP11388 1531 aaKnown RBP23.54■■□□□ 1.36
NPLOC4-213ENST00000573519 THOC2Q8NI27 1593 aaKnown RBP23.52■■□□□ 1.36
NPLOC4-213ENST00000573519 CFTRP13569 1480 aa23.36■■□□□ 1.33
NPLOC4-213ENST00000573519 MRC2Q9UBG0 1479 aa23.36■■□□□ 1.33
NPLOC4-213ENST00000573519 CEP164Q9UPV0 1460 aa23.34■■□□□ 1.33
NPLOC4-213ENST00000573519 DNAJC5Q9H3Z4 198 aa23.33■■□□□ 1.33
NPLOC4-213ENST00000573519 FANCD2Q9BXW9 1451 aa23.32■■□□□ 1.32
NPLOC4-213ENST00000573519 CCDC88BA6NC98 1476 aa23.28■■□□□ 1.32
NPLOC4-213ENST00000573519 WDR62O43379 1518 aa23.27■■□□□ 1.32
NPLOC4-213ENST00000573519 PRDM2Q13029 1718 aa23.14■■□□□ 1.3
NPLOC4-213ENST00000573519 URB2Q14146 1524 aaKnown RBP23.1■■□□□ 1.29
NPLOC4-213ENST00000573519 SUPT5HO00267 1087 aaKnown RBP22.97■■□□□ 1.27
NPLOC4-213ENST00000573519 TOPBP1Q92547 1522 aa22.91■■□□□ 1.26
NPLOC4-213ENST00000573519 ABCC8Q09428 1581 aa22.87■■□□□ 1.25
NPLOC4-213ENST00000573519 DNMBPQ6XZF7 1577 aa22.85■■□□□ 1.25
NPLOC4-213ENST00000573519 IFT140Q96RY7 1462 aa22.84■■□□□ 1.25
NPLOC4-213ENST00000573519 ZNF608Q9ULD9 1512 aaPredicted RBP22.78■■□□□ 1.24
NPLOC4-213ENST00000573519 POLA1P09884 1462 aaPredicted RBP22.69■■□□□ 1.22
NPLOC4-213ENST00000573519 OSCARQ8IYS5 282 aa22.69■■□□□ 1.22
NPLOC4-213ENST00000573519 EIF4G3O43432 1585 aaKnown RBP22.68■■□□□ 1.22
NPLOC4-213ENST00000573519 TARBP1Q13395 1621 aaKnown RBP22.66■■□□□ 1.22
NPLOC4-213ENST00000573519 RAD54L2Q9Y4B4 1467 aa22.63■■□□□ 1.21
NPLOC4-213ENST00000573519 AQRO60306 1485 aaKnown RBP eCLIP22.62■■□□□ 1.213e-6■■□□□ 12.9
NPLOC4-213ENST00000573519 SOGA1O94964 1423 aa22.62■■□□□ 1.21
NPLOC4-213ENST00000573519 CUX1P39880 1505 aa22.62■■□□□ 1.21
NPLOC4-213ENST00000573519 FGD5Q6ZNL6 1462 aa22.61■■□□□ 1.21
NPLOC4-213ENST00000573519 TDRD9Q8NDG6 1382 aaKnown RBP22.54■■□□□ 1.2
NPLOC4-213ENST00000573519 TRIM41Q8WV44 630 aa22.54■■□□□ 1.2
NPLOC4-213ENST00000573519 FBLN2P98095 1184 aa22.48■■□□□ 1.19
NPLOC4-213ENST00000573519 CHD1O14646 1710 aa22.45■■□□□ 1.18
NPLOC4-213ENST00000573519 WDR97A6NE52 1622 aa22.44■■□□□ 1.18
NPLOC4-213ENST00000573519 SNAPC4Q5SXM2 1469 aa22.41■■□□□ 1.18
NPLOC4-213ENST00000573519 WRNQ14191 1432 aaPredicted RBP eCLIP22.38■■□□□ 1.17
NPLOC4-213ENST00000573519 GRIN2BQ13224 1484 aa22.37■■□□□ 1.17
NPLOC4-213ENST00000573519 RIMBP3CA6NJZ7 1639 aa22.35■■□□□ 1.17
NPLOC4-213ENST00000573519 RIMBP3BA6NNM3 1639 aa22.35■■□□□ 1.17
NPLOC4-213ENST00000573519 RIMBP3Q9UFD9 1639 aa22.35■■□□□ 1.17
NPLOC4-213ENST00000573519 ABCA10Q8WWZ4 1543 aa22.34■■□□□ 1.17
NPLOC4-213ENST00000573519 TOP2BQ02880 1626 aa22.34■■□□□ 1.17
NPLOC4-213ENST00000573519 GAPVD1Q14C86 1478 aa22.34■■□□□ 1.17
NPLOC4-213ENST00000573519 SYNJ1O43426 1573 aa22.33■■□□□ 1.17
NPLOC4-213ENST00000573519 BIVM-ERCC5R4GMW8 1640 aa22.33■■□□□ 1.17
NPLOC4-213ENST00000573519 CHMP7Q8WUX9 453 aaPredicted RBP22.33■■□□□ 1.17
NPLOC4-213ENST00000573519 MAGI1Q96QZ7 1491 aaPredicted RBP22.33■■□□□ 1.16
NPLOC4-213ENST00000573519 PBRM1Q86U86 1689 aa22.32■■□□□ 1.16
NPLOC4-213ENST00000573519 ARHGEF11O15085 1522 aa22.31■■□□□ 1.16
NPLOC4-213ENST00000573519 ABCA5Q8WWZ7 1642 aa22.28■■□□□ 1.16
NPLOC4-213ENST00000573519 SYNJ2O15056 1496 aa22.26■■□□□ 1.15
NPLOC4-213ENST00000573519 CLASP1Q7Z460 1538 aa22.17■■□□□ 1.14
NPLOC4-213ENST00000573519 CYB5RLQ6IPT4 315 aa22.17■■□□□ 1.14
NPLOC4-213ENST00000573519 ADAMTS12P58397 1594 aa22.12■■□□□ 1.13
NPLOC4-213ENST00000573519 ARAP1Q96P48 1450 aa22.1■■□□□ 1.13
NPLOC4-213ENST00000573519 GRIN2AQ12879 1464 aa22.09■■□□□ 1.13
NPLOC4-213ENST00000573519 ERICH3Q5RHP9 1530 aa22.07■■□□□ 1.12
NPLOC4-213ENST00000573519 FHAD1B1AJZ9 1412 aa22.06■■□□□ 1.12
NPLOC4-213ENST00000573519 CEP170Q5SW79 1584 aa21.99■■□□□ 1.11
NPLOC4-213ENST00000573519 NUP160Q12769 1436 aa21.97■■□□□ 1.11
NPLOC4-213ENST00000573519 KIF27Q86VH2 1401 aa21.93■■□□□ 1.1
NPLOC4-213ENST00000573519 ERCC6L2Q5T890 1561 aa21.87■■□□□ 1.09
NPLOC4-213ENST00000573519 TRHP20396 242 aaPredicted RBP21.87■■□□□ 1.09
NPLOC4-213ENST00000573519 IGF1RP08069 1367 aa21.86■■□□□ 1.09
NPLOC4-213ENST00000573519 SHROOM2Q13796 1616 aa21.84■■□□□ 1.09
NPLOC4-213ENST00000573519 CUL7Q14999 1698 aa21.82■■□□□ 1.08
NPLOC4-213ENST00000573519 RUSC2Q8N2Y8 1516 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms