RNA–Protein interactions for RNA: ENST00000451716.5

COL27A1-202, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 2,865 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-202ENST00000451716 NISCHQ9Y2I1 1504 aa25.65■■□□□ 1.7
COL27A1-202ENST00000451716 CCDC180Q9P1Z9 1646 aa21.86■■□□□ 1.09
COL27A1-202ENST00000451716 SHROOM4Q9ULL8 1493 aa21.8■■□□□ 1.08
COL27A1-202ENST00000451716 ZCCHC6Q5VYS8 1495 aaKnown RBP21.63■■□□□ 1.05
COL27A1-202ENST00000451716 DCAF8L2P0C7V8 631 aa21.51■■□□□ 1.03
COL27A1-202ENST00000451716 SUPT5HO00267 1087 aaKnown RBP21.26■□□□□ 0.99
COL27A1-202ENST00000451716 DCAF1Q9Y4B6 1507 aa20.98■□□□□ 0.95
COL27A1-202ENST00000451716 ABCC9O60706 1549 aa20.63■□□□□ 0.89
COL27A1-202ENST00000451716 SCRIBQ14160 1630 aa20.56■□□□□ 0.88
COL27A1-202ENST00000451716 CHIC1Q5VXU3 224 aa20.48■□□□□ 0.87
COL27A1-202ENST00000451716 MYO15BQ96JP2 1530 aa20.46■□□□□ 0.87
COL27A1-202ENST00000451716 NACADO15069 1562 aa20.31■□□□□ 0.84
COL27A1-202ENST00000451716 RSF1Q96T23 1441 aaPredicted RBP20.22■□□□□ 0.83
COL27A1-202ENST00000451716 CECR2Q9BXF3 1484 aa20.09■□□□□ 0.81
COL27A1-202ENST00000451716 RB1CC1Q8TDY2 1594 aa20.05■□□□□ 0.8
COL27A1-202ENST00000451716 MROH2BQ7Z745 1585 aa19.96■□□□□ 0.79
COL27A1-202ENST00000451716 LOC105371045A0A1W2PR82 267 aa19.92■□□□□ 0.78
COL27A1-202ENST00000451716 WIZO95785 1651 aa19.84■□□□□ 0.77
COL27A1-202ENST00000451716 PELP1Q8IZL8 1130 aaKnown RBP19.8■□□□□ 0.76
COL27A1-202ENST00000451716 TRIM41Q8WV44 630 aa19.77■□□□□ 0.76
COL27A1-202ENST00000451716 UNC13AQ9UPW8 1703 aa19.76■□□□□ 0.75
COL27A1-202ENST00000451716 PABPN1Q86U42 306 aaKnown RBP eCLIP19.73■□□□□ 0.753e-9■■■■□ 22.2
COL27A1-202ENST00000451716 BAZ1AQ9NRL2 1556 aaPredicted RBP19.71■□□□□ 0.75
COL27A1-202ENST00000451716 FAM9AQ8IZU1 332 aaPredicted RBP19.67■□□□□ 0.74
COL27A1-202ENST00000451716 PCGF6Q9BYE7 350 aa19.6■□□□□ 0.73
COL27A1-202ENST00000451716 SMARCA4P51532 1647 aa19.58■□□□□ 0.73
COL27A1-202ENST00000451716 EHMT2Q96KQ7 1210 aa19.57■□□□□ 0.72
COL27A1-202ENST00000451716 BICRAQ9NZM4 1560 aa19.54■□□□□ 0.72
COL27A1-202ENST00000451716 TOP2AP11388 1531 aaKnown RBP19.48■□□□□ 0.71
COL27A1-202ENST00000451716 CCDC88BA6NC98 1476 aa19.44■□□□□ 0.7
COL27A1-202ENST00000451716 MYT1Q01538 1121 aa19.42■□□□□ 0.7
COL27A1-202ENST00000451716 SMARCA2P51531 1590 aa19.38■□□□□ 0.69
COL27A1-202ENST00000451716 EIF4G1Q04637 1599 aaKnown RBP19.38■□□□□ 0.69
COL27A1-202ENST00000451716 HRCP23327 699 aa19.34■□□□□ 0.69
COL27A1-202ENST00000451716 ABCC8Q09428 1581 aa19.32■□□□□ 0.68
COL27A1-202ENST00000451716 TRIM26Q12899 539 aaPredicted RBP19.22■□□□□ 0.67
COL27A1-202ENST00000451716 PEG3Q9GZU2 1588 aa19.18■□□□□ 0.66
COL27A1-202ENST00000451716 ATAD2BQ9ULI0 1458 aa19.17■□□□□ 0.66
COL27A1-202ENST00000451716 BAZ1BQ9UIG0 1483 aaKnown RBP19.11■□□□□ 0.65
COL27A1-202ENST00000451716 SOGA1O94964 1423 aa19.1■□□□□ 0.65
COL27A1-202ENST00000451716 PPARGC1BQ86YN6 1023 aaKnown RBP19.08■□□□□ 0.65
COL27A1-202ENST00000451716 RUSC2Q8N2Y8 1516 aa19.03■□□□□ 0.64
COL27A1-202ENST00000451716 WRNQ14191 1432 aaPredicted RBP eCLIP19.01■□□□□ 0.63
COL27A1-202ENST00000451716 CSRNP3Q8WYN3 585 aa18.95■□□□□ 0.62
COL27A1-202ENST00000451716 SYNJ1O43426 1573 aa18.92■□□□□ 0.62
COL27A1-202ENST00000451716 UBTFP17480 764 aaKnown RBP18.9■□□□□ 0.62
COL27A1-202ENST00000451716 EEA1Q15075 1411 aa18.85■□□□□ 0.61
COL27A1-202ENST00000451716 CEP162Q5TB80 1403 aa18.85■□□□□ 0.61
COL27A1-202ENST00000451716 TTBK1Q5TCY1 1321 aaPredicted RBP18.85■□□□□ 0.61
COL27A1-202ENST00000451716 NCAPD3P42695 1498 aa18.83■□□□□ 0.6
COL27A1-202ENST00000451716 TNIKQ9UKE5 1360 aa18.81■□□□□ 0.6
COL27A1-202ENST00000451716 HMGXB3Q12766 1538 aa18.77■□□□□ 0.6
COL27A1-202ENST00000451716 GOLGA3Q08378 1498 aa18.75■□□□□ 0.59
COL27A1-202ENST00000451716 RANGAP1P46060 587 aaPredicted RBP18.67■□□□□ 0.58
COL27A1-202ENST00000451716 CEP164Q9UPV0 1460 aa18.67■□□□□ 0.58
COL27A1-202ENST00000451716 TOP2BQ02880 1626 aa18.67■□□□□ 0.58
COL27A1-202ENST00000451716 RAPGEF2Q9Y4G8 1499 aa18.63■□□□□ 0.57
COL27A1-202ENST00000451716 ZEB1P37275 1124 aaPredicted RBP18.61■□□□□ 0.57
COL27A1-202ENST00000451716 CFTRP13569 1480 aa18.61■□□□□ 0.57
COL27A1-202ENST00000451716 KIF21BO75037 1637 aa18.61■□□□□ 0.57
COL27A1-202ENST00000451716 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.6■□□□□ 0.57
COL27A1-202ENST00000451716 CUX1P39880 1505 aa18.59■□□□□ 0.57
COL27A1-202ENST00000451716 BIVM-ERCC5R4GMW8 1640 aa18.58■□□□□ 0.57
COL27A1-202ENST00000451716 CLIP1P30622 1438 aa18.56■□□□□ 0.56
COL27A1-202ENST00000451716 CC2D2AQ9P2K1 1620 aa18.53■□□□□ 0.56
COL27A1-202ENST00000451716 CCER1Q8TC90 406 aaPredicted RBP18.49■□□□□ 0.55
COL27A1-202ENST00000451716 CADPSQ9ULU8 1353 aa18.48■□□□□ 0.55
COL27A1-202ENST00000451716 PRKCSHP14314 528 aaPredicted RBP18.47■□□□□ 0.55
COL27A1-202ENST00000451716 KIF27Q86VH2 1401 aa18.44■□□□□ 0.54
COL27A1-202ENST00000451716 PRXQ9BXM0 1461 aa18.44■□□□□ 0.54
COL27A1-202ENST00000451716 VPS8Q8N3P4 1428 aa18.42■□□□□ 0.54
COL27A1-202ENST00000451716 APLP2Q06481 763 aa18.38■□□□□ 0.53
COL27A1-202ENST00000451716 ERICH3Q5RHP9 1530 aa18.36■□□□□ 0.53
COL27A1-202ENST00000451716 PRDM2Q13029 1718 aa18.36■□□□□ 0.53
COL27A1-202ENST00000451716 CUX2O14529 1486 aa18.35■□□□□ 0.53
COL27A1-202ENST00000451716 HNRNPUL2Q1KMD3 747 aaKnown RBP18.33■□□□□ 0.53
COL27A1-202ENST00000451716 FGD5Q6ZNL6 1462 aa18.31■□□□□ 0.52
COL27A1-202ENST00000451716 NESP48681 1621 aa18.31■□□□□ 0.52
COL27A1-202ENST00000451716 FANCD2Q9BXW9 1451 aa18.3■□□□□ 0.52
COL27A1-202ENST00000451716 IGF1RP08069 1367 aa18.29■□□□□ 0.52
COL27A1-202ENST00000451716 ARAP1Q96P48 1450 aa18.28■□□□□ 0.52
COL27A1-202ENST00000451716 DNAJC5BQ9UF47 199 aa18.28■□□□□ 0.52
COL27A1-202ENST00000451716 SCAF1Q9H7N4 1312 aaKnown RBP18.26■□□□□ 0.51
COL27A1-202ENST00000451716 KANK4Q5T7N3 995 aaPredicted RBP18.22■□□□□ 0.51
COL27A1-202ENST00000451716 CARMIL1Q5VZK9 1371 aa18.2■□□□□ 0.5
COL27A1-202ENST00000451716 RAD54L2Q9Y4B4 1467 aa18.2■□□□□ 0.5
COL27A1-202ENST00000451716 ARHGAP35Q9NRY4 1499 aa18.18■□□□□ 0.5
COL27A1-202ENST00000451716 TOPBP1Q92547 1522 aa18.15■□□□□ 0.5
COL27A1-202ENST00000451716 POLA1P09884 1462 aaPredicted RBP18.13■□□□□ 0.49
COL27A1-202ENST00000451716 DNMBPQ6XZF7 1577 aa18.13■□□□□ 0.49
COL27A1-202ENST00000451716 P3H3Q8IVL6 736 aa18.1■□□□□ 0.49
COL27A1-202ENST00000451716 BCL11AQ9H165 835 aa18.08■□□□□ 0.48
COL27A1-202ENST00000451716 URB2Q14146 1524 aaKnown RBP18.06■□□□□ 0.48
COL27A1-202ENST00000451716 ABCA10Q8WWZ4 1543 aa18.06■□□□□ 0.48
COL27A1-202ENST00000451716 LAMC3Q9Y6N6 1575 aa18.04■□□□□ 0.48
COL27A1-202ENST00000451716 TDRD9Q8NDG6 1382 aaKnown RBP18.01■□□□□ 0.47
COL27A1-202ENST00000451716 ATP1B4Q9UN42 357 aaPredicted RBP18■□□□□ 0.47
COL27A1-202ENST00000451716 ITGAEP38570 1179 aa17.99■□□□□ 0.47
COL27A1-202ENST00000451716 PDS5BQ9NTI5 1447 aa17.98■□□□□ 0.47
COL27A1-202ENST00000451716 DIEXFQ68CQ4 756 aaKnown RBP17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms