RNA–Protein interactions for RNA: ENST00000331134.10

NPLOC4-201, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPLOC4, Length 4,415 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-201ENST00000331134 DCAF8L2P0C7V8 631 aa32.25■■■□□ 2.75
NPLOC4-201ENST00000331134 SUPT5HO00267 1087 aaKnown RBP31.7■■■□□ 2.67
NPLOC4-201ENST00000331134 NISCHQ9Y2I1 1504 aa31.19■■■□□ 2.58
NPLOC4-201ENST00000331134 SHROOM4Q9ULL8 1493 aa31.09■■■□□ 2.57
NPLOC4-201ENST00000331134 EHMT2Q96KQ7 1210 aa30.73■■■□□ 2.51
NPLOC4-201ENST00000331134 PCGF6Q9BYE7 350 aa30.44■■■□□ 2.46
NPLOC4-201ENST00000331134 FAM9AQ8IZU1 332 aaPredicted RBP29.91■■■□□ 2.38
NPLOC4-201ENST00000331134 TTBK1Q5TCY1 1321 aaPredicted RBP29.75■■■□□ 2.35
NPLOC4-201ENST00000331134 PELP1Q8IZL8 1130 aaKnown RBP29.42■■■□□ 2.3
NPLOC4-201ENST00000331134 HRCP23327 699 aa29.22■■■□□ 2.27
NPLOC4-201ENST00000331134 CENPBP07199 599 aaPredicted RBP29.2■■■□□ 2.26
NPLOC4-201ENST00000331134 CCER1Q8TC90 406 aaPredicted RBP29.2■■■□□ 2.26
NPLOC4-201ENST00000331134 ZEB1P37275 1124 aaPredicted RBP29.12■■■□□ 2.25
NPLOC4-201ENST00000331134 PPARGC1BQ86YN6 1023 aaKnown RBP29.1■■■□□ 2.25
NPLOC4-201ENST00000331134 APLP2Q06481 763 aa29.1■■■□□ 2.25
NPLOC4-201ENST00000331134 YTHDC1Q96MU7 727 aaKnown RBP29.02■■■□□ 2.24
NPLOC4-201ENST00000331134 TRIM41Q8WV44 630 aa29.02■■■□□ 2.24
NPLOC4-201ENST00000331134 RANGAP1P46060 587 aaPredicted RBP28.93■■■□□ 2.22
NPLOC4-201ENST00000331134 LOC105371045A0A1W2PR82 267 aa28.85■■■□□ 2.21
NPLOC4-201ENST00000331134 TRIM26Q12899 539 aaPredicted RBP28.73■■■□□ 2.19
NPLOC4-201ENST00000331134 CHIC1Q5VXU3 224 aa28.64■■■□□ 2.18
NPLOC4-201ENST00000331134 ERICH6Q7L0X2 663 aa28.49■■■□□ 2.15
NPLOC4-201ENST00000331134 UBTFP17480 764 aaKnown RBP28.49■■■□□ 2.15
NPLOC4-201ENST00000331134 MYT1Q01538 1121 aa28.37■■■□□ 2.13
NPLOC4-201ENST00000331134 ATP1B4Q9UN42 357 aaPredicted RBP28.19■■■□□ 2.1
NPLOC4-201ENST00000331134 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.18■■■□□ 2.1
NPLOC4-201ENST00000331134 NEFLP07196 543 aa28.15■■■□□ 2.1
NPLOC4-201ENST00000331134 HNRNPUL2Q1KMD3 747 aaKnown RBP28■■■□□ 2.07
NPLOC4-201ENST00000331134 DIEXFQ68CQ4 756 aaKnown RBP27.97■■■□□ 2.07
NPLOC4-201ENST00000331134 ITGAEP38570 1179 aa27.88■■■□□ 2.05
NPLOC4-201ENST00000331134 GTF3C3Q9Y5Q9 886 aa27.88■■■□□ 2.05
NPLOC4-201ENST00000331134 CNGB1Q14028 1251 aaPredicted RBP27.57■■■□□ 2
NPLOC4-201ENST00000331134 BCANQ96GW7 911 aa27.48■■□□□ 1.99
NPLOC4-201ENST00000331134 ACIN1Q9UKV3 1341 aaKnown RBP27.44■■□□□ 1.98
NPLOC4-201ENST00000331134 POLR3GLQ9BT43 218 aa27.4■■□□□ 1.98
NPLOC4-201ENST00000331134 ZNF316A6NFI3 1004 aaPredicted RBP27.16■■□□□ 1.94
NPLOC4-201ENST00000331134 SCAF1Q9H7N4 1312 aaKnown RBP27.16■■□□□ 1.94
NPLOC4-201ENST00000331134 NEUROD1Q13562 356 aa27.12■■□□□ 1.93
NPLOC4-201ENST00000331134 DAXXQ9UER7 740 aaPredicted RBP27.03■■□□□ 1.92
NPLOC4-201ENST00000331134 FAM50AQ14320 339 aaKnown RBP26.9■■□□□ 1.9
NPLOC4-201ENST00000331134 RTL5Q5HYW3 569 aaPredicted RBP26.9■■□□□ 1.9
NPLOC4-201ENST00000331134 ANP32CO43423 234 aa26.69■■□□□ 1.86
NPLOC4-201ENST00000331134 MYO15BQ96JP2 1530 aa26.69■■□□□ 1.86
NPLOC4-201ENST00000331134 CDK11AQ9UQ88 783 aaPredicted RBP26.68■■□□□ 1.86
NPLOC4-201ENST00000331134 DCAF1Q9Y4B6 1507 aa26.67■■□□□ 1.86
NPLOC4-201ENST00000331134 FKBP8Q14318 412 aa26.62■■□□□ 1.85
NPLOC4-201ENST00000331134 TRIM52Q96A61 297 aa26.59■■□□□ 1.85
NPLOC4-201ENST00000331134 CLSPNQ9HAW4 1339 aa26.58■■□□□ 1.84
NPLOC4-201ENST00000331134 MIER1Q8N108 512 aa26.57■■□□□ 1.84
NPLOC4-201ENST00000331134 CSRNP3Q8WYN3 585 aa26.52■■□□□ 1.84
NPLOC4-201ENST00000331134 PABPN1Q86U42 306 aaKnown RBP eCLIP26.49■■□□□ 1.835e-6■□□□□ 8.9
NPLOC4-201ENST00000331134 ZNF326Q5BKZ1 582 aaKnown RBP26.48■■□□□ 1.83
NPLOC4-201ENST00000331134 DDX10Q13206 875 aaKnown RBP26.42■■□□□ 1.82
NPLOC4-201ENST00000331134 MYT1LQ9UL68 1186 aa26.4■■□□□ 1.82
NPLOC4-201ENST00000331134 P3H3Q8IVL6 736 aa26.35■■□□□ 1.81
NPLOC4-201ENST00000331134 SLC4A1APQ9BWU0 796 aaKnown RBP26.34■■□□□ 1.81
NPLOC4-201ENST00000331134 NPM2Q86SE8 214 aaKnown RBP26.3■■□□□ 1.8
NPLOC4-201ENST00000331134 HNRNPUQ00839 825 aaKnown RBP eCLIP26.25■■□□□ 1.792e-8■■□□□ 13.5
NPLOC4-201ENST00000331134 ABCC9O60706 1549 aa26.22■■□□□ 1.79
NPLOC4-201ENST00000331134 HIRIP3Q9BW71 556 aaPredicted RBP26.22■■□□□ 1.79
NPLOC4-201ENST00000331134 IRX6P78412 446 aaPredicted RBP26.2■■□□□ 1.79
NPLOC4-201ENST00000331134 ANP32AP39687 249 aaKnown RBP26.16■■□□□ 1.78
NPLOC4-201ENST00000331134 ARID3CA6NKF2 412 aa26.16■■□□□ 1.78
NPLOC4-201ENST00000331134 NBR1Q14596 966 aa26.15■■□□□ 1.78
NPLOC4-201ENST00000331134 EIF5BO60841 1220 aaKnown RBP26.12■■□□□ 1.77
NPLOC4-201ENST00000331134 FAM9BQ8IZU0 186 aa26.11■■□□□ 1.77
NPLOC4-201ENST00000331134 BCL11AQ9H165 835 aa26.04■■□□□ 1.76
NPLOC4-201ENST00000331134 SALL2Q9Y467 1007 aaPredicted RBP26.02■■□□□ 1.76
NPLOC4-201ENST00000331134 ZCCHC6Q5VYS8 1495 aaKnown RBP25.91■■□□□ 1.74
NPLOC4-201ENST00000331134 TONSLQ96HA7 1378 aa25.91■■□□□ 1.74
NPLOC4-201ENST00000331134 ANP32EQ9BTT0 268 aa25.89■■□□□ 1.73
NPLOC4-201ENST00000331134 SENP3-EIF4A1A0A087X0R7 540 aa25.87■■□□□ 1.73
NPLOC4-201ENST00000331134 CCDC136Q96JN2 1154 aa25.84■■□□□ 1.73
NPLOC4-201ENST00000331134 CANXP27824 592 aaKnown RBP25.8■■□□□ 1.72
NPLOC4-201ENST00000331134 ZBTB47Q9UFB7 747 aaPredicted RBP25.78■■□□□ 1.72
NPLOC4-201ENST00000331134 MRS2Q9HD23 443 aa25.76■■□□□ 1.71
NPLOC4-201ENST00000331134 SUPT16HQ9Y5B9 1047 aaKnown RBP25.75■■□□□ 1.71
NPLOC4-201ENST00000331134 CHIC2Q9UKJ5 165 aa25.75■■□□□ 1.71
NPLOC4-201ENST00000331134 ZNF777Q9ULD5 760 aaPredicted RBP25.73■■□□□ 1.71
NPLOC4-201ENST00000331134 ARXQ96QS3 562 aa25.71■■□□□ 1.71
NPLOC4-201ENST00000331134 CCDC180Q9P1Z9 1646 aa25.7■■□□□ 1.71
NPLOC4-201ENST00000331134 SCRIBQ14160 1630 aa25.68■■□□□ 1.7
NPLOC4-201ENST00000331134 FBLN2P98095 1184 aa25.64■■□□□ 1.7
NPLOC4-201ENST00000331134 CEP162Q5TB80 1403 aa25.63■■□□□ 1.69
NPLOC4-201ENST00000331134 TMC1Q8TDI8 760 aa25.62■■□□□ 1.69
NPLOC4-201ENST00000331134 CLIP1P30622 1438 aa25.61■■□□□ 1.69
NPLOC4-201ENST00000331134 SIN3AQ96ST3 1273 aa25.5■■□□□ 1.67
NPLOC4-201ENST00000331134 RSF1Q96T23 1441 aaPredicted RBP25.5■■□□□ 1.67
NPLOC4-201ENST00000331134 RTN4Q9NQC3 1192 aaKnown RBP25.49■■□□□ 1.67
NPLOC4-201ENST00000331134 KDM2AQ9Y2K7 1162 aa25.43■■□□□ 1.66
NPLOC4-201ENST00000331134 RRP7BPQ9NSQ0 103 aa25.4■■□□□ 1.66
NPLOC4-201ENST00000331134 EIF4G2P78344 907 aaKnown RBP eCLIP25.39■■□□□ 1.652e-15■■■■□ 23.9
NPLOC4-201ENST00000331134 B4GALNT3Q6L9W6 998 aa25.38■■□□□ 1.65
NPLOC4-201ENST00000331134 RBM19Q9Y4C8 960 aaKnown RBP25.37■■□□□ 1.65
NPLOC4-201ENST00000331134 HSP90AA1P07900 732 aaKnown RBP25.36■■□□□ 1.65
NPLOC4-201ENST00000331134 SLC24A1O60721 1099 aa25.33■■□□□ 1.65
NPLOC4-201ENST00000331134 LAS1LQ9Y4W2 734 aaKnown RBP25.32■■□□□ 1.64
NPLOC4-201ENST00000331134 TSHZ2Q9NRE2 1034 aa25.3■■□□□ 1.64
NPLOC4-201ENST00000331134 UPF2Q9HAU5 1272 aaKnown RBP25.29■■□□□ 1.64
NPLOC4-201ENST00000331134 TNIKQ9UKE5 1360 aa25.25■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms