RNA–Protein interactions for RNA: ENST00000233330.6

RTKN-201, Transcript of rhotekin, humanhuman

TSL 1 (best) BASIC

Gene RTKN, Length 2,220 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTKN-201ENST00000233330 NISCHQ9Y2I1 1504 aa42.78■■■■■ 4.44
RTKN-201ENST00000233330 CCDC180Q9P1Z9 1646 aa36.88■■■■□ 3.49
RTKN-201ENST00000233330 ZCCHC6Q5VYS8 1495 aaKnown RBP36.1■■■■□ 3.37
RTKN-201ENST00000233330 SHROOM4Q9ULL8 1493 aa35.61■■■■□ 3.29
RTKN-201ENST00000233330 DCAF1Q9Y4B6 1507 aa35.29■■■■□ 3.24
RTKN-201ENST00000233330 DCAF8L2P0C7V8 631 aa35.18■■■■□ 3.22
RTKN-201ENST00000233330 SUPT5HO00267 1087 aaKnown RBP34.62■■■■□ 3.13
RTKN-201ENST00000233330 MYO15BQ96JP2 1530 aa34.55■■■■□ 3.12
RTKN-201ENST00000233330 ABCC9O60706 1549 aa34.29■■■■□ 3.08
RTKN-201ENST00000233330 SCRIBQ14160 1630 aa34.16■■■■□ 3.06
RTKN-201ENST00000233330 NACADO15069 1562 aa34.15■■■■□ 3.06
RTKN-201ENST00000233330 RB1CC1Q8TDY2 1594 aa33.69■■■□□ 2.98
RTKN-201ENST00000233330 RSF1Q96T23 1441 aaPredicted RBP33.53■■■□□ 2.96
RTKN-201ENST00000233330 CHIC1Q5VXU3 224 aa33.52■■■□□ 2.96
RTKN-201ENST00000233330 CECR2Q9BXF3 1484 aa33.26■■■□□ 2.91
RTKN-201ENST00000233330 UNC13AQ9UPW8 1703 aa33.2■■■□□ 2.91
RTKN-201ENST00000233330 MROH2BQ7Z745 1585 aa33.14■■■□□ 2.9
RTKN-201ENST00000233330 WIZO95785 1651 aa32.95■■■□□ 2.87
RTKN-201ENST00000233330 BAZ1AQ9NRL2 1556 aaPredicted RBP32.95■■■□□ 2.87
RTKN-201ENST00000233330 BICRAQ9NZM4 1560 aa32.75■■■□□ 2.83
RTKN-201ENST00000233330 SMARCA4P51532 1647 aa32.75■■■□□ 2.83
RTKN-201ENST00000233330 TOP2AP11388 1531 aaKnown RBP32.53■■■□□ 2.8
RTKN-201ENST00000233330 PABPN1Q86U42 306 aaKnown RBP eCLIP32.53■■■□□ 2.86e-7■□□□□ 8.2
RTKN-201ENST00000233330 TRIM41Q8WV44 630 aa32.43■■■□□ 2.78
RTKN-201ENST00000233330 EIF4G1Q04637 1599 aaKnown RBP32.38■■■□□ 2.77
RTKN-201ENST00000233330 LOC105371045A0A1W2PR82 267 aa32.34■■■□□ 2.77
RTKN-201ENST00000233330 SMARCA2P51531 1590 aa32.3■■■□□ 2.76
RTKN-201ENST00000233330 PEG3Q9GZU2 1588 aa32.26■■■□□ 2.75
RTKN-201ENST00000233330 CCDC88BA6NC98 1476 aa32.26■■■□□ 2.75
RTKN-201ENST00000233330 ATAD2BQ9ULI0 1458 aa31.99■■■□□ 2.71
RTKN-201ENST00000233330 FAM9AQ8IZU1 332 aaPredicted RBP31.95■■■□□ 2.71
RTKN-201ENST00000233330 ABCC8Q09428 1581 aa31.91■■■□□ 2.7
RTKN-201ENST00000233330 BAZ1BQ9UIG0 1483 aaKnown RBP31.85■■■□□ 2.69
RTKN-201ENST00000233330 PCGF6Q9BYE7 350 aa31.69■■■□□ 2.66
RTKN-201ENST00000233330 HMGXB3Q12766 1538 aa31.56■■■□□ 2.64
RTKN-201ENST00000233330 EHMT2Q96KQ7 1210 aa31.55■■■□□ 2.64
RTKN-201ENST00000233330 NCAPD3P42695 1498 aa31.53■■■□□ 2.64
RTKN-201ENST00000233330 WRNQ14191 1432 aaPredicted RBP eCLIP31.52■■■□□ 2.64
RTKN-201ENST00000233330 SOGA1O94964 1423 aa31.45■■■□□ 2.63
RTKN-201ENST00000233330 SYNJ1O43426 1573 aa31.42■■■□□ 2.62
RTKN-201ENST00000233330 EEA1Q15075 1411 aa31.41■■■□□ 2.62
RTKN-201ENST00000233330 TRIM26Q12899 539 aaPredicted RBP31.41■■■□□ 2.62
RTKN-201ENST00000233330 HRCP23327 699 aa31.39■■■□□ 2.62
RTKN-201ENST00000233330 RUSC2Q8N2Y8 1516 aa31.31■■■□□ 2.6
RTKN-201ENST00000233330 CSRNP3Q8WYN3 585 aa31.23■■■□□ 2.59
RTKN-201ENST00000233330 TOP2BQ02880 1626 aa31.17■■■□□ 2.58
RTKN-201ENST00000233330 BIVM-ERCC5R4GMW8 1640 aa31.13■■■□□ 2.57
RTKN-201ENST00000233330 TNIKQ9UKE5 1360 aa31.12■■■□□ 2.57
RTKN-201ENST00000233330 CFTRP13569 1480 aa31.08■■■□□ 2.57
RTKN-201ENST00000233330 GOLGA3Q08378 1498 aa31.08■■■□□ 2.57
RTKN-201ENST00000233330 CEP162Q5TB80 1403 aa31.07■■■□□ 2.56
RTKN-201ENST00000233330 KIF21BO75037 1637 aa31.03■■■□□ 2.56
RTKN-201ENST00000233330 CC2D2AQ9P2K1 1620 aa31.03■■■□□ 2.56
RTKN-201ENST00000233330 PRDM2Q13029 1718 aa31.01■■■□□ 2.56
RTKN-201ENST00000233330 CEP164Q9UPV0 1460 aa30.99■■■□□ 2.55
RTKN-201ENST00000233330 UBTFP17480 764 aaKnown RBP30.93■■■□□ 2.54
RTKN-201ENST00000233330 CUX1P39880 1505 aa30.93■■■□□ 2.54
RTKN-201ENST00000233330 CADPSQ9ULU8 1353 aa30.8■■■□□ 2.52
RTKN-201ENST00000233330 PPARGC1BQ86YN6 1023 aaKnown RBP30.8■■■□□ 2.52
RTKN-201ENST00000233330 RAPGEF2Q9Y4G8 1499 aa30.77■■■□□ 2.52
RTKN-201ENST00000233330 ERICH3Q5RHP9 1530 aa30.65■■■□□ 2.5
RTKN-201ENST00000233330 PRXQ9BXM0 1461 aa30.64■■■□□ 2.49
RTKN-201ENST00000233330 CLIP1P30622 1438 aa30.62■■■□□ 2.49
RTKN-201ENST00000233330 KIF27Q86VH2 1401 aa30.62■■■□□ 2.49
RTKN-201ENST00000233330 FANCD2Q9BXW9 1451 aa30.5■■■□□ 2.47
RTKN-201ENST00000233330 ZEB1P37275 1124 aaPredicted RBP30.5■■■□□ 2.47
RTKN-201ENST00000233330 VPS8Q8N3P4 1428 aa30.47■■■□□ 2.47
RTKN-201ENST00000233330 FGD5Q6ZNL6 1462 aa30.45■■■□□ 2.47
RTKN-201ENST00000233330 TTBK1Q5TCY1 1321 aaPredicted RBP30.4■■■□□ 2.46
RTKN-201ENST00000233330 CUX2O14529 1486 aa30.4■■■□□ 2.46
RTKN-201ENST00000233330 NESP48681 1621 aa30.38■■■□□ 2.45
RTKN-201ENST00000233330 DNMBPQ6XZF7 1577 aa30.35■■■□□ 2.45
RTKN-201ENST00000233330 LAMC3Q9Y6N6 1575 aa30.34■■■□□ 2.45
RTKN-201ENST00000233330 IGF1RP08069 1367 aa30.29■■■□□ 2.44
RTKN-201ENST00000233330 RANGAP1P46060 587 aaPredicted RBP30.29■■■□□ 2.44
RTKN-201ENST00000233330 TOPBP1Q92547 1522 aa30.26■■■□□ 2.44
RTKN-201ENST00000233330 ARAP1Q96P48 1450 aa30.26■■■□□ 2.43
RTKN-201ENST00000233330 POLA1P09884 1462 aaPredicted RBP30.19■■■□□ 2.42
RTKN-201ENST00000233330 ABCA10Q8WWZ4 1543 aa30.16■■■□□ 2.42
RTKN-201ENST00000233330 CARMIL1Q5VZK9 1371 aa30.15■■■□□ 2.42
RTKN-201ENST00000233330 APLP2Q06481 763 aa30.15■■■□□ 2.42
RTKN-201ENST00000233330 RAD54L2Q9Y4B4 1467 aa30.14■■■□□ 2.41
RTKN-201ENST00000233330 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.14■■■□□ 2.41
RTKN-201ENST00000233330 DNAJC5BQ9UF47 199 aa30.11■■■□□ 2.41
RTKN-201ENST00000233330 URB2Q14146 1524 aaKnown RBP30.1■■■□□ 2.41
RTKN-201ENST00000233330 ARHGAP35Q9NRY4 1499 aa30.1■■■□□ 2.41
RTKN-201ENST00000233330 PDS5BQ9NTI5 1447 aa30.07■■■□□ 2.4
RTKN-201ENST00000233330 CCER1Q8TC90 406 aaPredicted RBP30.06■■■□□ 2.4
RTKN-201ENST00000233330 WDR97A6NE52 1622 aa30.04■■■□□ 2.4
RTKN-201ENST00000233330 KIF21AQ7Z4S6 1674 aa30.02■■■□□ 2.4
RTKN-201ENST00000233330 CUL7Q14999 1698 aa29.98■■■□□ 2.39
RTKN-201ENST00000233330 ABCA5Q8WWZ7 1642 aa29.89■■■□□ 2.37
RTKN-201ENST00000233330 KANK4Q5T7N3 995 aaPredicted RBP29.84■■■□□ 2.37
RTKN-201ENST00000233330 CTTNBP2Q8WZ74 1663 aa29.81■■■□□ 2.36
RTKN-201ENST00000233330 HNRNPUL2Q1KMD3 747 aaKnown RBP29.81■■■□□ 2.36
RTKN-201ENST00000233330 TARBP1Q13395 1621 aaKnown RBP29.76■■■□□ 2.35
RTKN-201ENST00000233330 GAPVD1Q14C86 1478 aa29.76■■■□□ 2.35
RTKN-201ENST00000233330 TDRD9Q8NDG6 1382 aaKnown RBP29.76■■■□□ 2.35
RTKN-201ENST00000233330 MAP3K1Q13233 1512 aa29.74■■■□□ 2.35
RTKN-201ENST00000233330 TIAM1Q13009 1591 aa29.72■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms