Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 SUZ12P1-203ENST00000578195 985 ntBASIC25.2■■□□□ 1.62
VPS11Q9H270 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC25.2■■□□□ 1.62
VPS11Q9H270 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
VPS11Q9H270 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
VPS11Q9H270 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC25.2■■□□□ 1.62
VPS11Q9H270 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
VPS11Q9H270 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
VPS11Q9H270 HNRNPLP2-201ENST00000568980 1570 ntBASIC25.19■■□□□ 1.62
VPS11Q9H270 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC25.19■■□□□ 1.62
VPS11Q9H270 AC091060.1-201ENST00000623524 1766 ntBASIC25.19■■□□□ 1.62
VPS11Q9H270 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC25.19■■□□□ 1.62
VPS11Q9H270 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC25.19■■□□□ 1.62
VPS11Q9H270 MEST-211ENST00000437945 1455 ntTSL 5 BASIC25.19■■□□□ 1.62
VPS11Q9H270 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC25.19■■□□□ 1.62
VPS11Q9H270 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
VPS11Q9H270 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
VPS11Q9H270 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC25.18■■□□□ 1.62
VPS11Q9H270 AC135983.2-203ENST00000454486 1613 ntBASIC25.18■■□□□ 1.62
VPS11Q9H270 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC25.17■■□□□ 1.62
VPS11Q9H270 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
VPS11Q9H270 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
VPS11Q9H270 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
VPS11Q9H270 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC25.16■■□□□ 1.62
VPS11Q9H270 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC25.16■■□□□ 1.62
VPS11Q9H270 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
VPS11Q9H270 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
VPS11Q9H270 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
VPS11Q9H270 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
VPS11Q9H270 AC108673.1-201ENST00000510422 1159 ntBASIC25.15■■□□□ 1.62
VPS11Q9H270 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
VPS11Q9H270 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
VPS11Q9H270 WHAMMP2-203ENST00000563942 1603 ntBASIC25.14■■□□□ 1.61
VPS11Q9H270 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
VPS11Q9H270 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC25.12■■□□□ 1.61
VPS11Q9H270 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC25.12■■□□□ 1.61
VPS11Q9H270 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC25.12■■□□□ 1.61
VPS11Q9H270 MIR6090-201ENST00000622481 60 ntBASIC25.12■■□□□ 1.61
VPS11Q9H270 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC25.12■■□□□ 1.61
VPS11Q9H270 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
VPS11Q9H270 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
VPS11Q9H270 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
VPS11Q9H270 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
VPS11Q9H270 EI24-212ENST00000615917 1407 ntTSL 2 BASIC25.1■■□□□ 1.61
VPS11Q9H270 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
VPS11Q9H270 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
VPS11Q9H270 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
VPS11Q9H270 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC25.09■■□□□ 1.61
VPS11Q9H270 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
VPS11Q9H270 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
VPS11Q9H270 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
VPS11Q9H270 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
VPS11Q9H270 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
VPS11Q9H270 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC25.08■■□□□ 1.6
VPS11Q9H270 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC25.07■■□□□ 1.6
VPS11Q9H270 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
VPS11Q9H270 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC25.07■■□□□ 1.6
VPS11Q9H270 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC25.07■■□□□ 1.6
VPS11Q9H270 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC25.07■■□□□ 1.6
VPS11Q9H270 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC25.07■■□□□ 1.6
VPS11Q9H270 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
VPS11Q9H270 AC018358.1-201ENST00000631079 1402 ntBASIC25.06■■□□□ 1.6
VPS11Q9H270 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
VPS11Q9H270 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
VPS11Q9H270 DUX4L28-201ENST00000623687 678 ntBASIC25.06■■□□□ 1.6
VPS11Q9H270 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
VPS11Q9H270 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC25.06■■□□□ 1.6
VPS11Q9H270 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC25.05■■□□□ 1.6
VPS11Q9H270 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC25.05■■□□□ 1.6
VPS11Q9H270 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC25.05■■□□□ 1.6
VPS11Q9H270 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
VPS11Q9H270 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC25.05■■□□□ 1.6
VPS11Q9H270 AC145676.1-201ENST00000514988 2004 ntBASIC25.05■■□□□ 1.6
VPS11Q9H270 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
VPS11Q9H270 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC25.05■■□□□ 1.6
VPS11Q9H270 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
VPS11Q9H270 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
VPS11Q9H270 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
VPS11Q9H270 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC25.04■■□□□ 1.6
VPS11Q9H270 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
VPS11Q9H270 LINC00273-201ENST00000539813 1452 ntBASIC25.03■■□□□ 1.6
VPS11Q9H270 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
VPS11Q9H270 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
VPS11Q9H270 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC25.03■■□□□ 1.6
VPS11Q9H270 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
VPS11Q9H270 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
VPS11Q9H270 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC25.02■■□□□ 1.6
VPS11Q9H270 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
VPS11Q9H270 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC25.01■■□□□ 1.59
VPS11Q9H270 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC25.01■■□□□ 1.59
VPS11Q9H270 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
VPS11Q9H270 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
VPS11Q9H270 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
VPS11Q9H270 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
VPS11Q9H270 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
VPS11Q9H270 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC24.98■■□□□ 1.59
VPS11Q9H270 AC020928.2-201ENST00000588717 2197 ntBASIC24.98■■□□□ 1.59
VPS11Q9H270 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
VPS11Q9H270 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
VPS11Q9H270 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
VPS11Q9H270 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC24.97■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms