Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RPS2-210ENST00000530225 765 ntTSL 2 BASIC25.5■■□□□ 1.67
VPS13AQ96RL7 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
VPS13AQ96RL7 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
VPS13AQ96RL7 AC009831.1-201ENST00000580420 1582 ntBASIC25.5■■□□□ 1.67
VPS13AQ96RL7 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
VPS13AQ96RL7 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
VPS13AQ96RL7 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
VPS13AQ96RL7 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
VPS13AQ96RL7 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
VPS13AQ96RL7 LSM7-203ENST00000585409 512 ntTSL 2 BASIC25.49■■□□□ 1.67
VPS13AQ96RL7 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
VPS13AQ96RL7 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC25.48■■□□□ 1.67
VPS13AQ96RL7 AC110285.7-201ENST00000624417 1536 ntBASIC25.48■■□□□ 1.67
VPS13AQ96RL7 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC25.48■■□□□ 1.67
VPS13AQ96RL7 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC25.48■■□□□ 1.67
VPS13AQ96RL7 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
VPS13AQ96RL7 ECEL1P2-201ENST00000461596 1295 ntBASIC25.47■■□□□ 1.67
VPS13AQ96RL7 AC025884.2-201ENST00000553429 711 ntBASIC25.47■■□□□ 1.67
VPS13AQ96RL7 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
VPS13AQ96RL7 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC25.47■■□□□ 1.67
VPS13AQ96RL7 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
VPS13AQ96RL7 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
VPS13AQ96RL7 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC25.46■■□□□ 1.67
VPS13AQ96RL7 BEX3-202ENST00000372634 753 ntTSL 2 BASIC25.46■■□□□ 1.67
VPS13AQ96RL7 AC010980.1-201ENST00000587192 1142 ntBASIC25.46■■□□□ 1.67
VPS13AQ96RL7 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
VPS13AQ96RL7 AL356441.2-201ENST00000443009 864 ntBASIC25.45■■□□□ 1.66
VPS13AQ96RL7 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
VPS13AQ96RL7 AL592293.1-201ENST00000502889 1188 ntBASIC25.45■■□□□ 1.66
VPS13AQ96RL7 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
VPS13AQ96RL7 AC103834.1-201ENST00000520383 144 ntBASIC25.44■■□□□ 1.66
VPS13AQ96RL7 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
VPS13AQ96RL7 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC25.44■■□□□ 1.66
VPS13AQ96RL7 AC133552.2-201ENST00000619106 1032 ntBASIC25.44■■□□□ 1.66
VPS13AQ96RL7 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC25.43■■□□□ 1.66
VPS13AQ96RL7 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC25.43■■□□□ 1.66
VPS13AQ96RL7 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC25.43■■□□□ 1.66
VPS13AQ96RL7 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC25.43■■□□□ 1.66
VPS13AQ96RL7 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
VPS13AQ96RL7 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC25.42■■□□□ 1.66
VPS13AQ96RL7 AC120057.4-201ENST00000624722 1615 ntBASIC25.42■■□□□ 1.66
VPS13AQ96RL7 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
VPS13AQ96RL7 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
VPS13AQ96RL7 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
VPS13AQ96RL7 PEX7-203ENST00000541292 945 ntTSL 5 BASIC25.42■■□□□ 1.66
VPS13AQ96RL7 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC25.41■■□□□ 1.66
VPS13AQ96RL7 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
VPS13AQ96RL7 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC25.41■■□□□ 1.66
VPS13AQ96RL7 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC25.41■■□□□ 1.66
VPS13AQ96RL7 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC25.41■■□□□ 1.66
VPS13AQ96RL7 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
VPS13AQ96RL7 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC25.4■■□□□ 1.66
VPS13AQ96RL7 MED25-210ENST00000612854 801 ntTSL 5 BASIC25.4■■□□□ 1.66
VPS13AQ96RL7 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
VPS13AQ96RL7 MED25-214ENST00000622402 642 ntTSL 5 BASIC25.4■■□□□ 1.66
VPS13AQ96RL7 AC103724.3-201ENST00000564481 992 ntBASIC25.39■■□□□ 1.66
VPS13AQ96RL7 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC25.39■■□□□ 1.66
VPS13AQ96RL7 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
VPS13AQ96RL7 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC25.38■■□□□ 1.65
VPS13AQ96RL7 AC127502.1-201ENST00000399971 1502 ntBASIC25.38■■□□□ 1.65
VPS13AQ96RL7 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC25.37■■□□□ 1.65
VPS13AQ96RL7 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC25.37■■□□□ 1.65
VPS13AQ96RL7 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC25.36■■□□□ 1.65
VPS13AQ96RL7 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC25.36■■□□□ 1.65
VPS13AQ96RL7 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
VPS13AQ96RL7 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC25.36■■□□□ 1.65
VPS13AQ96RL7 BHLHE23-202ENST00000612929 1109 ntBASIC25.36■■□□□ 1.65
VPS13AQ96RL7 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
VPS13AQ96RL7 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC25.34■■□□□ 1.65
VPS13AQ96RL7 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC25.34■■□□□ 1.65
VPS13AQ96RL7 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
VPS13AQ96RL7 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
VPS13AQ96RL7 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
VPS13AQ96RL7 AC026202.3-201ENST00000600805 1127 ntBASIC25.33■■□□□ 1.65
VPS13AQ96RL7 MIR6765-201ENST00000614092 87 ntBASIC25.33■■□□□ 1.65
VPS13AQ96RL7 SMPD5-203ENST00000639008 1464 ntBASIC25.33■■□□□ 1.65
VPS13AQ96RL7 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.65
VPS13AQ96RL7 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
VPS13AQ96RL7 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC25.33■■□□□ 1.64
VPS13AQ96RL7 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC25.32■■□□□ 1.64
VPS13AQ96RL7 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
VPS13AQ96RL7 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
VPS13AQ96RL7 RAP2CP1-202ENST00000605179 643 ntBASIC25.32■■□□□ 1.64
VPS13AQ96RL7 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
VPS13AQ96RL7 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC25.31■■□□□ 1.64
VPS13AQ96RL7 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
VPS13AQ96RL7 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
VPS13AQ96RL7 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC25.31■■□□□ 1.64
VPS13AQ96RL7 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
VPS13AQ96RL7 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC25.3■■□□□ 1.64
VPS13AQ96RL7 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
VPS13AQ96RL7 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC25.3■■□□□ 1.64
VPS13AQ96RL7 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC25.3■■□□□ 1.64
VPS13AQ96RL7 SPCS2P3-201ENST00000500401 656 ntBASIC25.3■■□□□ 1.64
VPS13AQ96RL7 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
VPS13AQ96RL7 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
VPS13AQ96RL7 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC25.3■■□□□ 1.64
VPS13AQ96RL7 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
VPS13AQ96RL7 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC25.29■■□□□ 1.64
VPS13AQ96RL7 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC25.29■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms