Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PTCHD1Q96NR3 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC23.74■■□□□ 1.39
PTCHD1Q96NR3 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PTCHD1Q96NR3 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
PTCHD1Q96NR3 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
PTCHD1Q96NR3 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PTCHD1Q96NR3 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PTCHD1Q96NR3 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.71■■□□□ 1.39
PTCHD1Q96NR3 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC23.71■■□□□ 1.39
PTCHD1Q96NR3 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
PTCHD1Q96NR3 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PTCHD1Q96NR3 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.38
PTCHD1Q96NR3 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
PTCHD1Q96NR3 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
PTCHD1Q96NR3 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
PTCHD1Q96NR3 CHST11-203ENST00000547956 936 ntTSL 2 BASIC23.7■■□□□ 1.38
PTCHD1Q96NR3 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC23.7■■□□□ 1.38
PTCHD1Q96NR3 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
PTCHD1Q96NR3 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
PTCHD1Q96NR3 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PTCHD1Q96NR3 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
PTCHD1Q96NR3 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
PTCHD1Q96NR3 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
PTCHD1Q96NR3 DRD5P2-201ENST00000421395 2012 ntBASIC23.7■■□□□ 1.38
PTCHD1Q96NR3 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PTCHD1Q96NR3 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PTCHD1Q96NR3 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PTCHD1Q96NR3 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
PTCHD1Q96NR3 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC23.69■■□□□ 1.38
PTCHD1Q96NR3 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC23.69■■□□□ 1.38
PTCHD1Q96NR3 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC23.69■■□□□ 1.38
PTCHD1Q96NR3 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PTCHD1Q96NR3 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PTCHD1Q96NR3 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PTCHD1Q96NR3 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC23.68■■□□□ 1.38
PTCHD1Q96NR3 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PTCHD1Q96NR3 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
PTCHD1Q96NR3 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PTCHD1Q96NR3 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PTCHD1Q96NR3 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
PTCHD1Q96NR3 AC148477.6-201ENST00000623746 465 ntBASIC23.67■■□□□ 1.38
PTCHD1Q96NR3 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
PTCHD1Q96NR3 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PTCHD1Q96NR3 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
PTCHD1Q96NR3 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
PTCHD1Q96NR3 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
PTCHD1Q96NR3 PROC-203ENST00000409048 1586 ntTSL 5 BASIC23.66■■□□□ 1.38
PTCHD1Q96NR3 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
PTCHD1Q96NR3 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
PTCHD1Q96NR3 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
PTCHD1Q96NR3 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC23.66■■□□□ 1.38
PTCHD1Q96NR3 MIR219A2-201ENST00000608502 1504 ntBASIC23.65■■□□□ 1.38
PTCHD1Q96NR3 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
PTCHD1Q96NR3 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC23.64■■□□□ 1.38
PTCHD1Q96NR3 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.38
PTCHD1Q96NR3 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
PTCHD1Q96NR3 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC23.64■■□□□ 1.37
PTCHD1Q96NR3 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
PTCHD1Q96NR3 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC23.64■■□□□ 1.37
PTCHD1Q96NR3 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PTCHD1Q96NR3 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
PTCHD1Q96NR3 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PTCHD1Q96NR3 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
PTCHD1Q96NR3 TPT1-202ENST00000379055 948 ntTSL 2 BASIC23.62■■□□□ 1.37
PTCHD1Q96NR3 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PTCHD1Q96NR3 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC23.61■■□□□ 1.37
PTCHD1Q96NR3 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
PTCHD1Q96NR3 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC23.61■■□□□ 1.37
PTCHD1Q96NR3 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC23.61■■□□□ 1.37
PTCHD1Q96NR3 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC23.61■■□□□ 1.37
PTCHD1Q96NR3 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC23.61■■□□□ 1.37
PTCHD1Q96NR3 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
PTCHD1Q96NR3 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC23.6■■□□□ 1.37
PTCHD1Q96NR3 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PTCHD1Q96NR3 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
PTCHD1Q96NR3 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC23.6■■□□□ 1.37
PTCHD1Q96NR3 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PTCHD1Q96NR3 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
PTCHD1Q96NR3 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
PTCHD1Q96NR3 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC23.59■■□□□ 1.37
PTCHD1Q96NR3 SRP68-213ENST00000629930 165 ntTSL 5 BASIC23.59■■□□□ 1.37
PTCHD1Q96NR3 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC23.58■■□□□ 1.37
PTCHD1Q96NR3 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
PTCHD1Q96NR3 AC142086.6-201ENST00000621154 1765 ntBASIC23.58■■□□□ 1.37
PTCHD1Q96NR3 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
PTCHD1Q96NR3 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
PTCHD1Q96NR3 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
PTCHD1Q96NR3 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
PTCHD1Q96NR3 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC23.58■■□□□ 1.37
PTCHD1Q96NR3 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
PTCHD1Q96NR3 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
PTCHD1Q96NR3 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
PTCHD1Q96NR3 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
PTCHD1Q96NR3 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
PTCHD1Q96NR3 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
PTCHD1Q96NR3 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
PTCHD1Q96NR3 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
PTCHD1Q96NR3 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC23.56■■□□□ 1.36
PTCHD1Q96NR3 ABHD17AP3-201ENST00000503096 1137 ntBASIC23.56■■□□□ 1.36
PTCHD1Q96NR3 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms