Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
CBX4O00257 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CBX4O00257 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
CBX4O00257 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
CBX4O00257 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CBX4O00257 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CBX4O00257 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CBX4O00257 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CBX4O00257 CHST11-203ENST00000547956 936 ntTSL 2 BASIC25.79■■□□□ 1.72
CBX4O00257 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CBX4O00257 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CBX4O00257 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CBX4O00257 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
CBX4O00257 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
CBX4O00257 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
CBX4O00257 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC25.79■■□□□ 1.72
CBX4O00257 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
CBX4O00257 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
CBX4O00257 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC25.78■■□□□ 1.72
CBX4O00257 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
CBX4O00257 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC25.78■■□□□ 1.72
CBX4O00257 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC25.78■■□□□ 1.72
CBX4O00257 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC25.78■■□□□ 1.72
CBX4O00257 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
CBX4O00257 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
CBX4O00257 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
CBX4O00257 SHF-206ENST00000560471 2499 ntTSL 5 BASIC25.77■■□□□ 1.72
CBX4O00257 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
CBX4O00257 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
CBX4O00257 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
CBX4O00257 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
CBX4O00257 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
CBX4O00257 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
CBX4O00257 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
CBX4O00257 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC25.76■■□□□ 1.71
CBX4O00257 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
CBX4O00257 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
CBX4O00257 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC25.75■■□□□ 1.71
CBX4O00257 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC25.75■■□□□ 1.71
CBX4O00257 AC148477.6-201ENST00000623746 465 ntBASIC25.75■■□□□ 1.71
CBX4O00257 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC25.75■■□□□ 1.71
CBX4O00257 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC25.74■■□□□ 1.71
CBX4O00257 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC25.74■■□□□ 1.71
CBX4O00257 MIR219A2-201ENST00000608502 1504 ntBASIC25.74■■□□□ 1.71
CBX4O00257 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC25.74■■□□□ 1.71
CBX4O00257 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC25.73■■□□□ 1.71
CBX4O00257 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CBX4O00257 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CBX4O00257 PROC-203ENST00000409048 1586 ntTSL 5 BASIC25.73■■□□□ 1.71
CBX4O00257 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC25.72■■□□□ 1.71
CBX4O00257 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC25.71■■□□□ 1.71
CBX4O00257 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC25.7■■□□□ 1.7
CBX4O00257 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
CBX4O00257 TPT1-202ENST00000379055 948 ntTSL 2 BASIC25.7■■□□□ 1.7
CBX4O00257 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC25.7■■□□□ 1.7
CBX4O00257 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
CBX4O00257 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC25.69■■□□□ 1.7
CBX4O00257 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CBX4O00257 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC25.69■■□□□ 1.7
CBX4O00257 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
CBX4O00257 SRP68-213ENST00000629930 165 ntTSL 5 BASIC25.69■■□□□ 1.7
CBX4O00257 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CBX4O00257 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CBX4O00257 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC25.68■■□□□ 1.7
CBX4O00257 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CBX4O00257 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
CBX4O00257 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC25.68■■□□□ 1.7
CBX4O00257 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CBX4O00257 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC25.67■■□□□ 1.7
CBX4O00257 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC25.67■■□□□ 1.7
CBX4O00257 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CBX4O00257 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CBX4O00257 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC25.66■■□□□ 1.7
CBX4O00257 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC25.66■■□□□ 1.7
CBX4O00257 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CBX4O00257 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC25.66■■□□□ 1.7
CBX4O00257 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CBX4O00257 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CBX4O00257 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CBX4O00257 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
CBX4O00257 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
CBX4O00257 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CBX4O00257 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
CBX4O00257 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
CBX4O00257 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC25.63■■□□□ 1.69
CBX4O00257 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC25.63■■□□□ 1.69
CBX4O00257 AC018358.1-201ENST00000631079 1402 ntBASIC25.63■■□□□ 1.69
CBX4O00257 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CBX4O00257 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC25.62■■□□□ 1.69
CBX4O00257 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CBX4O00257 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC25.61■■□□□ 1.69
CBX4O00257 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC25.61■■□□□ 1.69
CBX4O00257 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CBX4O00257 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CBX4O00257 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
CBX4O00257 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
CBX4O00257 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC25.59■■□□□ 1.69
CBX4O00257 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC25.59■■□□□ 1.69
CBX4O00257 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC25.59■■□□□ 1.69
CBX4O00257 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms