Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 MIR3648-1-201ENST00000615959 180 ntBASIC21.11■□□□□ 0.97
NKX6-3A6NJ46 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NKX6-3A6NJ46 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
NKX6-3A6NJ46 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NKX6-3A6NJ46 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
NKX6-3A6NJ46 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NKX6-3A6NJ46 AC008813.1-201ENST00000536597 885 ntBASIC21.09■□□□□ 0.97
NKX6-3A6NJ46 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
NKX6-3A6NJ46 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NKX6-3A6NJ46 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
NKX6-3A6NJ46 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NKX6-3A6NJ46 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NKX6-3A6NJ46 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NKX6-3A6NJ46 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC21.08■□□□□ 0.97
NKX6-3A6NJ46 PEX7-203ENST00000541292 945 ntTSL 5 BASIC21.08■□□□□ 0.97
NKX6-3A6NJ46 AC016575.1-201ENST00000607026 382 ntBASIC21.08■□□□□ 0.97
NKX6-3A6NJ46 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
NKX6-3A6NJ46 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.96
NKX6-3A6NJ46 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NKX6-3A6NJ46 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
NKX6-3A6NJ46 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NKX6-3A6NJ46 RPS2-210ENST00000530225 765 ntTSL 2 BASIC21.07■□□□□ 0.96
NKX6-3A6NJ46 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NKX6-3A6NJ46 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
NKX6-3A6NJ46 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC21.07■□□□□ 0.96
NKX6-3A6NJ46 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NKX6-3A6NJ46 AC018358.1-201ENST00000631079 1402 ntBASIC21.06■□□□□ 0.96
NKX6-3A6NJ46 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NKX6-3A6NJ46 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NKX6-3A6NJ46 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NKX6-3A6NJ46 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
NKX6-3A6NJ46 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
NKX6-3A6NJ46 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC21.05■□□□□ 0.96
NKX6-3A6NJ46 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
NKX6-3A6NJ46 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC21.04■□□□□ 0.96
NKX6-3A6NJ46 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.04■□□□□ 0.96
NKX6-3A6NJ46 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NKX6-3A6NJ46 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC21.03■□□□□ 0.96
NKX6-3A6NJ46 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
NKX6-3A6NJ46 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NKX6-3A6NJ46 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
NKX6-3A6NJ46 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
NKX6-3A6NJ46 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NKX6-3A6NJ46 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
NKX6-3A6NJ46 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NKX6-3A6NJ46 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.02■□□□□ 0.95
NKX6-3A6NJ46 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC21.01■□□□□ 0.95
NKX6-3A6NJ46 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
NKX6-3A6NJ46 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
NKX6-3A6NJ46 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NKX6-3A6NJ46 HLA-V-202ENST00000446817 847 ntBASIC21.01■□□□□ 0.95
NKX6-3A6NJ46 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
NKX6-3A6NJ46 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC21.01■□□□□ 0.95
NKX6-3A6NJ46 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NKX6-3A6NJ46 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC21■□□□□ 0.95
NKX6-3A6NJ46 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NKX6-3A6NJ46 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.99■□□□□ 0.95
NKX6-3A6NJ46 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC20.99■□□□□ 0.95
NKX6-3A6NJ46 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NKX6-3A6NJ46 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NKX6-3A6NJ46 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
NKX6-3A6NJ46 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC20.98■□□□□ 0.95
NKX6-3A6NJ46 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NKX6-3A6NJ46 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NKX6-3A6NJ46 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC20.98■□□□□ 0.95
NKX6-3A6NJ46 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX6-3A6NJ46 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX6-3A6NJ46 BX255925.1-201ENST00000566954 1854 ntBASIC20.97■□□□□ 0.95
NKX6-3A6NJ46 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
NKX6-3A6NJ46 METRNL-202ENST00000570778 967 ntTSL 5 BASIC20.97■□□□□ 0.95
NKX6-3A6NJ46 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NKX6-3A6NJ46 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NKX6-3A6NJ46 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
NKX6-3A6NJ46 MIR639-201ENST00000384974 98 ntBASIC20.96■□□□□ 0.95
NKX6-3A6NJ46 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC20.96■□□□□ 0.95
NKX6-3A6NJ46 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
NKX6-3A6NJ46 LINC01003-201ENST00000564834 1764 ntBASIC20.95■□□□□ 0.94
NKX6-3A6NJ46 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
NKX6-3A6NJ46 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC20.95■□□□□ 0.94
NKX6-3A6NJ46 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NKX6-3A6NJ46 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
NKX6-3A6NJ46 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
NKX6-3A6NJ46 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NKX6-3A6NJ46 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
NKX6-3A6NJ46 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC20.94■□□□□ 0.94
NKX6-3A6NJ46 AC148477.6-201ENST00000623746 465 ntBASIC20.94■□□□□ 0.94
NKX6-3A6NJ46 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NKX6-3A6NJ46 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NKX6-3A6NJ46 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
NKX6-3A6NJ46 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC20.93■□□□□ 0.94
NKX6-3A6NJ46 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC20.93■□□□□ 0.94
NKX6-3A6NJ46 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.93■□□□□ 0.94
NKX6-3A6NJ46 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NKX6-3A6NJ46 MBP-237ENST00000579129 1052 ntTSL 5 BASIC20.93■□□□□ 0.94
NKX6-3A6NJ46 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC20.93■□□□□ 0.94
NKX6-3A6NJ46 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
NKX6-3A6NJ46 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
NKX6-3A6NJ46 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
NKX6-3A6NJ46 RPS2-202ENST00000526522 924 ntTSL 2 BASIC20.92■□□□□ 0.94
NKX6-3A6NJ46 CHST11-203ENST00000547956 936 ntTSL 2 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms