RNA–Protein interactions for RNA: YLL039C

UBI4, Transcript of Ubiquitin, yeastyeast

Gene UBI4, Length 1,146 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBI4YLL039C MTC1P47018 478 aaKnown RBP13.28□□□□□ -0.28
UBI4YLL039C FAP1P53971 965 aa12.22□□□□□ -0.45
UBI4YLL039C DRS1P32892 752 aaKnown RBP12.1□□□□□ -0.47
UBI4YLL039C PRY3P47033 881 aa11.52□□□□□ -0.57
UBI4YLL039C PRI1P10363 409 aa11.36□□□□□ -0.59
UBI4YLL039C AAD16Q02895 342 aa11.31□□□□□ -0.6
UBI4YLL039C ISW2Q08773 1120 aa11.03□□□□□ -0.64
UBI4YLL039C RPG1P38249 964 aaKnown RBP10.96□□□□□ -0.65
UBI4YLL039C YCK3P39962 524 aa10.95□□□□□ -0.66
UBI4YLL039C HAA1Q12753 694 aaKnown RBP10.79□□□□□ -0.68
UBI4YLL039C TSR3Q12094 313 aaKnown RBP10.72□□□□□ -0.69
UBI4YLL039C DIP2Q12220 943 aaPredicted RBP10.72□□□□□ -0.69
UBI4YLL039C RSE1Q04693 1361 aaKnown RBP10.43□□□□□ -0.74
UBI4YLL039C MRPL32P25348 183 aa10.28□□□□□ -0.76
UBI4YLL039C AVT3P36062 692 aa10.28□□□□□ -0.76
UBI4YLL039C RPL17AP05740 184 aaKnown RBP10.13□□□□□ -0.79
UBI4YLL039C RPL17BP46990 184 aaKnown RBP10.13□□□□□ -0.79
UBI4YLL039C REB1P21538 810 aa10.08□□□□□ -0.8
UBI4YLL039C YGL015CP33199 130 aa9.93□□□□□ -0.82
UBI4YLL039C BFR2Q06631 534 aaKnown RBP9.91□□□□□ -0.82
UBI4YLL039C CDC27P38042 758 aa9.76□□□□□ -0.85
UBI4YLL039C SPT21P35209 758 aa9.7□□□□□ -0.86
UBI4YLL039C YKR023WP36119 530 aaKnown RBP9.66□□□□□ -0.86
UBI4YLL039C UBP10P53874 792 aaPredicted RBP9.48□□□□□ -0.89
UBI4YLL039C MAP2P38174 421 aaKnown RBP9.47□□□□□ -0.89
UBI4YLL039C TFC8Q12308 588 aa9.46□□□□□ -0.9
UBI4YLL039C HOP09932 586 aa9.45□□□□□ -0.9
UBI4YLL039C DCD1P06773 312 aa9.42□□□□□ -0.9
UBI4YLL039C RIM101P33400 625 aa9.3□□□□□ -0.92
UBI4YLL039C BUD31P25337 157 aaPredicted RBP9.25□□□□□ -0.93
UBI4YLL039C SCY1P53009 804 aa9.22□□□□□ -0.93
UBI4YLL039C BCH2P36122 765 aa9.13□□□□□ -0.95
UBI4YLL039C SLX5P32828 619 aaKnown RBP9.11□□□□□ -0.95
UBI4YLL039C TIF4632P39936 914 aaKnown RBP9.07□□□□□ -0.96
UBI4YLL039C TGL3P40308 642 aa9.06□□□□□ -0.96
UBI4YLL039C OXP1P28273 1286 aa8.98□□□□□ -0.97
UBI4YLL039C EPS1P40557 701 aa8.88□□□□□ -0.99
UBI4YLL039C BDF1P35817 686 aa8.85□□□□□ -0.99
UBI4YLL039C UBP9P39967 754 aa8.84□□□□□ -0.99
UBI4YLL039C PTP3P40048 928 aa8.8□□□□□ -1
UBI4YLL039C YIL055CP40523 627 aaKnown RBP8.79□□□□□ -1
UBI4YLL039C SIS1P25294 352 aaKnown RBP8.74□□□□□ -1.01
UBI4YLL039C RSM7P47150 247 aa8.7□□□□□ -1.02
UBI4YLL039C MST1P07236 462 aa8.68□□□□□ -1.02
UBI4YLL039C AI2P03876 854 aa8.64□□□□□ -1.03
UBI4YLL039C YAH1Q12184 172 aaKnown RBP8.64□□□□□ -1.03
UBI4YLL039C MON2P48563 1636 aaPredicted RBP8.64□□□□□ -1.03
UBI4YLL039C BBC1P47068 1157 aa8.63□□□□□ -1.03
UBI4YLL039C INO80P53115 1489 aa8.63□□□□□ -1.03
UBI4YLL039C YOR238WQ08634 303 aa8.61□□□□□ -1.03
UBI4YLL039C NSR1P27476 414 aaKnown RBP RIP-Chip data8.59□□□□□ -1.03not detected
UBI4YLL039C YBL029C-AQ3E756 94 aa8.55□□□□□ -1.04
UBI4YLL039C TFA1P36100 482 aa8.54□□□□□ -1.04
UBI4YLL039C YLR271WQ06152 274 aa8.52□□□□□ -1.05
UBI4YLL039C SGS1P35187 1447 aa8.5□□□□□ -1.05
UBI4YLL039C YAP5P40574 245 aa8.5□□□□□ -1.05
UBI4YLL039C VNX1P42839 908 aa8.46□□□□□ -1.06
UBI4YLL039C TCB3Q03640 1545 aaKnown RBP8.44□□□□□ -1.06
UBI4YLL039C PSD2P53037 1138 aaKnown RBP8.43□□□□□ -1.06
UBI4YLL039C WSC3Q12215 556 aa8.37□□□□□ -1.07
UBI4YLL039C TY1B-DR4Q07793 1604 aa8.36□□□□□ -1.07
UBI4YLL039C SPP1Q03012 353 aa8.36□□□□□ -1.07
UBI4YLL039C SWR1Q05471 1514 aa8.32□□□□□ -1.08
UBI4YLL039C MRM1P25270 412 aa8.31□□□□□ -1.08
UBI4YLL039C SSP1P38871 571 aa8.31□□□□□ -1.08
UBI4YLL039C GTT3P39996 337 aa8.3□□□□□ -1.08
UBI4YLL039C TIF11P38912 153 aaKnown RBP8.28□□□□□ -1.08
UBI4YLL039C PIB1Q06651 286 aa8.27□□□□□ -1.09
UBI4YLL039C ARP8Q12386 881 aaKnown RBP RIP-Chip data8.26□□□□□ -1.09not detected
UBI4YLL039C AIR2Q12476 344 aaKnown RBP8.23□□□□□ -1.09
UBI4YLL039C DNA2P38859 1522 aa8.23□□□□□ -1.09
UBI4YLL039C FKH1P40466 484 aa8.21□□□□□ -1.1
UBI4YLL039C CST9Q06032 482 aa8.2□□□□□ -1.1
UBI4YLL039C IOC2Q12072 812 aa8.18□□□□□ -1.1
UBI4YLL039C VPS29P38759 282 aa8.17□□□□□ -1.1
UBI4YLL039C ULI1P43604 169 aa8.17□□□□□ -1.1
UBI4YLL039C LDB19Q12502 818 aa8.16□□□□□ -1.1
UBI4YLL039C MGA2P40578 1113 aa8.15□□□□□ -1.1
UBI4YLL039C KOG1P38873 1557 aa8.14□□□□□ -1.11
UBI4YLL039C YMR1P47147 688 aaKnown RBP RIP-Chip data8.13□□□□□ -1.11not detected
UBI4YLL039C MSB4Q12317 492 aa8.12□□□□□ -1.11
UBI4YLL039C HSL1P34244 1518 aa8.12□□□□□ -1.11
UBI4YLL039C DBP1P24784 617 aaKnown RBP8.11□□□□□ -1.11
UBI4YLL039C RTG3P38165 486 aa8.11□□□□□ -1.11
UBI4YLL039C YJL171CP46992 396 aa8.11□□□□□ -1.11
UBI4YLL039C SPT6P23615 1451 aaKnown RBP8.11□□□□□ -1.11
UBI4YLL039C YFR006WP43590 535 aa8.09□□□□□ -1.11
UBI4YLL039C YOL036WQ08206 761 aa8.09□□□□□ -1.11
UBI4YLL039C STS1P38637 319 aa8.07□□□□□ -1.12
UBI4YLL039C EAP1P36041 632 aaKnown RBP8.06□□□□□ -1.12
UBI4YLL039C SET4P42948 560 aa8.06□□□□□ -1.12
UBI4YLL039C VMA1P17255 1071 aaKnown RBP8.04□□□□□ -1.12
UBI4YLL039C RCR1P38212 213 aa8.04□□□□□ -1.12
UBI4YLL039C SPA2P23201 1466 aaKnown RBP8.04□□□□□ -1.12
UBI4YLL039C TRP5P00931 707 aaKnown RBP8.03□□□□□ -1.12
UBI4YLL039C SAM3Q08986 587 aa8.01□□□□□ -1.13
UBI4YLL039C BMT6Q12291 365 aa8.01□□□□□ -1.13
UBI4YLL039C RTG1P32607 177 aa7.99□□□□□ -1.13
UBI4YLL039C HIR3P47171 1648 aa7.96□□□□□ -1.13
UBI4YLL039C YNL035CP53962 389 aaKnown RBP7.94□□□□□ -1.14
Retrieved 100 of 5,963 RNA–protein pairs in 28.5 ms