RNA–Protein interactions for RNA: YJL140W

RPB4, Transcript of RNA polymerase II subunit B32, yeastyeast

Gene RPB4, Length 666 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPB4YJL140W MTC1P47018 478 aaKnown RBP15.93■□□□□ 0.14
RPB4YJL140W DRS1P32892 752 aaKnown RBP14.86□□□□□ -0.03
RPB4YJL140W FAP1P53971 965 aa14.51□□□□□ -0.09
RPB4YJL140W PRY3P47033 881 aa13.62□□□□□ -0.23
RPB4YJL140W PRI1P10363 409 aa13.47□□□□□ -0.25
RPB4YJL140W AAD16Q02895 342 aa13.43□□□□□ -0.26
RPB4YJL140W ISW2Q08773 1120 aa13.26□□□□□ -0.29
RPB4YJL140W RPG1P38249 964 aaKnown RBP13.13□□□□□ -0.31
RPB4YJL140W DIP2Q12220 943 aaPredicted RBP13.05□□□□□ -0.32
RPB4YJL140W TSR3Q12094 313 aaKnown RBP12.78□□□□□ -0.36
RPB4YJL140W YCK3P39962 524 aa12.75□□□□□ -0.37
RPB4YJL140W HAA1Q12753 694 aaKnown RBP12.75□□□□□ -0.37
RPB4YJL140W RSE1Q04693 1361 aaKnown RBP12.64□□□□□ -0.39
RPB4YJL140W AVT3P36062 692 aa12.52□□□□□ -0.41
RPB4YJL140W BFR2Q06631 534 aaKnown RBP12.52□□□□□ -0.41
RPB4YJL140W MRPL32P25348 183 aa12.29□□□□□ -0.44
RPB4YJL140W RPL17AP05740 184 aaKnown RBP12.25□□□□□ -0.45
RPB4YJL140W RPL17BP46990 184 aaKnown RBP12.25□□□□□ -0.45
RPB4YJL140W REB1P21538 810 aa12.22□□□□□ -0.45
RPB4YJL140W YGL015CP33199 130 aa11.79□□□□□ -0.52
RPB4YJL140W SPT21P35209 758 aa11.64□□□□□ -0.55
RPB4YJL140W CDC27P38042 758 aa11.6□□□□□ -0.55
RPB4YJL140W YKR023WP36119 530 aaKnown RBP11.56□□□□□ -0.56
RPB4YJL140W HOP09932 586 aa11.37□□□□□ -0.59
RPB4YJL140W TFC8Q12308 588 aa11.32□□□□□ -0.6
RPB4YJL140W DCD1P06773 312 aa11.31□□□□□ -0.6
RPB4YJL140W TFA1P36100 482 aa11.31□□□□□ -0.6
RPB4YJL140W UBP10P53874 792 aaPredicted RBP11.28□□□□□ -0.6
RPB4YJL140W MAP2P38174 421 aaKnown RBP11.27□□□□□ -0.61
RPB4YJL140W RIM101P33400 625 aa11.25□□□□□ -0.61
RPB4YJL140W SCY1P53009 804 aa11.05□□□□□ -0.64
RPB4YJL140W BCH2P36122 765 aa10.97□□□□□ -0.65
RPB4YJL140W SLX5P32828 619 aaKnown RBP10.91□□□□□ -0.66
RPB4YJL140W TIF4632P39936 914 aaKnown RBP10.88□□□□□ -0.67
RPB4YJL140W OXP1P28273 1286 aa10.87□□□□□ -0.67
RPB4YJL140W BUD31P25337 157 aaPredicted RBP10.79□□□□□ -0.68
RPB4YJL140W TGL3P40308 642 aa10.79□□□□□ -0.68
RPB4YJL140W YIL055CP40523 627 aaKnown RBP10.79□□□□□ -0.68
RPB4YJL140W PTP3P40048 928 aa10.78□□□□□ -0.68
RPB4YJL140W EPS1P40557 701 aa10.68□□□□□ -0.7
RPB4YJL140W BDF1P35817 686 aa10.64□□□□□ -0.71
RPB4YJL140W MON2P48563 1636 aaPredicted RBP10.62□□□□□ -0.71
RPB4YJL140W INO80P53115 1489 aa10.62□□□□□ -0.71
RPB4YJL140W YAH1Q12184 172 aaKnown RBP10.61□□□□□ -0.71
RPB4YJL140W RSM7P47150 247 aa10.58□□□□□ -0.72
RPB4YJL140W BBC1P47068 1157 aa10.53□□□□□ -0.72
RPB4YJL140W UBP9P39967 754 aa10.52□□□□□ -0.73
RPB4YJL140W AI2P03876 854 aa10.49□□□□□ -0.73
RPB4YJL140W YLR271WQ06152 274 aa10.37□□□□□ -0.75
RPB4YJL140W SSP1P38871 571 aa10.35□□□□□ -0.75
RPB4YJL140W SIS1P25294 352 aaKnown RBP10.34□□□□□ -0.75
RPB4YJL140W YOR238WQ08634 303 aa10.32□□□□□ -0.76
RPB4YJL140W ARP8Q12386 881 aaKnown RBP RIP-Chip data10.3□□□□□ -0.76not detected
RPB4YJL140W MST1P07236 462 aa10.29□□□□□ -0.76
RPB4YJL140W NSR1P27476 414 aaKnown RBP RIP-Chip data10.24□□□□□ -0.77not detected
RPB4YJL140W YAP5P40574 245 aa10.23□□□□□ -0.77
RPB4YJL140W PSD2P53037 1138 aaKnown RBP10.2□□□□□ -0.78
RPB4YJL140W YBL029C-AQ3E756 94 aa10.19□□□□□ -0.78
RPB4YJL140W MRM1P25270 412 aa10.12□□□□□ -0.79
RPB4YJL140W DNA2P38859 1522 aa10.11□□□□□ -0.79
RPB4YJL140W SWR1Q05471 1514 aa10.08□□□□□ -0.8
RPB4YJL140W MGA2P40578 1113 aa10.08□□□□□ -0.8
RPB4YJL140W VNX1P42839 908 aa10.07□□□□□ -0.8
RPB4YJL140W WSC3Q12215 556 aa10.06□□□□□ -0.8
RPB4YJL140W GTT3P39996 337 aa10.04□□□□□ -0.8
RPB4YJL140W SPP1Q03012 353 aa10.02□□□□□ -0.81
RPB4YJL140W PIB1Q06651 286 aa10.02□□□□□ -0.81
RPB4YJL140W CST9Q06032 482 aa10□□□□□ -0.81
RPB4YJL140W TCB3Q03640 1545 aaKnown RBP9.99□□□□□ -0.81
RPB4YJL140W KOG1P38873 1557 aa9.98□□□□□ -0.81
RPB4YJL140W TY1B-DR4Q07793 1604 aa9.93□□□□□ -0.82
RPB4YJL140W RTG3P38165 486 aa9.9□□□□□ -0.82
RPB4YJL140W TIF11P38912 153 aaKnown RBP9.9□□□□□ -0.82
RPB4YJL140W VPS29P38759 282 aa9.86□□□□□ -0.83
RPB4YJL140W YMR1P47147 688 aaKnown RBP RIP-Chip data9.86□□□□□ -0.83not detected
RPB4YJL140W DBP1P24784 617 aaKnown RBP9.84□□□□□ -0.83
RPB4YJL140W YFR006WP43590 535 aa9.82□□□□□ -0.84
RPB4YJL140W ULI1P43604 169 aa9.79□□□□□ -0.84
RPB4YJL140W RCR1P38212 213 aa9.77□□□□□ -0.85
RPB4YJL140W SGS1P35187 1447 aa9.76□□□□□ -0.85
RPB4YJL140W STS1P38637 319 aa9.76□□□□□ -0.85
RPB4YJL140W LDB19Q12502 818 aa9.75□□□□□ -0.85
RPB4YJL140W MSB4Q12317 492 aa9.74□□□□□ -0.85
RPB4YJL140W SET4P42948 560 aa9.73□□□□□ -0.85
RPB4YJL140W YJL171CP46992 396 aa9.72□□□□□ -0.85
RPB4YJL140W IOC2Q12072 812 aa9.72□□□□□ -0.85
RPB4YJL140W AIR2Q12476 344 aaKnown RBP9.72□□□□□ -0.85
RPB4YJL140W VMA1P17255 1071 aaKnown RBP9.71□□□□□ -0.86
RPB4YJL140W EAP1P36041 632 aaKnown RBP9.71□□□□□ -0.86
RPB4YJL140W FKH1P40466 484 aa9.71□□□□□ -0.86
RPB4YJL140W YOL036WQ08206 761 aa9.71□□□□□ -0.86
RPB4YJL140W TRP5P00931 707 aaKnown RBP9.63□□□□□ -0.87
RPB4YJL140W SAM3Q08986 587 aa9.63□□□□□ -0.87
RPB4YJL140W SPT6P23615 1451 aaKnown RBP9.61□□□□□ -0.87
RPB4YJL140W HSL1P34244 1518 aa9.61□□□□□ -0.87
RPB4YJL140W RTG1P32607 177 aa9.58□□□□□ -0.88
RPB4YJL140W BMT6Q12291 365 aa9.56□□□□□ -0.88
RPB4YJL140W SPA2P23201 1466 aaKnown RBP9.55□□□□□ -0.88
RPB4YJL140W GYP5Q12344 894 aa9.55□□□□□ -0.88
RPB4YJL140W NCR1Q12200 1170 aa9.54□□□□□ -0.88
Retrieved 100 of 5,963 RNA–protein pairs in 583.3 ms