RNA–Protein interactions for RNA: YGR116W

SPT6, Transcript of Nucleosome remodeling protein, yeastyeast

Gene SPT6, Length 4,356 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SPT6YGR116W SPA2P23201 1466 aaKnown RBP5.66□□□□□ -1.5
SPT6YGR116W SGS1P35187 1447 aa5.64□□□□□ -1.51
SPT6YGR116W SSN2P38931 1420 aa5.54□□□□□ -1.52
SPT6YGR116W DRS1P32892 752 aaKnown RBP5.48□□□□□ -1.53
SPT6YGR116W INO80P53115 1489 aa5.48□□□□□ -1.53
SPT6YGR116W SKI3P17883 1432 aaKnown RBP5.43□□□□□ -1.54
SPT6YGR116W NOP2P40991 618 aaKnown RBP5.29□□□□□ -1.56
SPT6YGR116W TCB3Q03640 1545 aaKnown RBP5.26□□□□□ -1.57
SPT6YGR116W CHD1P32657 1468 aa5.18□□□□□ -1.58
SPT6YGR116W MMS22Q06164 1454 aa5.16□□□□□ -1.58
SPT6YGR116W BFR2Q06631 534 aaKnown RBP5.13□□□□□ -1.59
SPT6YGR116W NSR1P27476 414 aaKnown RBP RIP-Chip data5.11□□□□□ -1.59not detected
SPT6YGR116W XRN1P22147 1528 aaKnown RBP5.1□□□□□ -1.59
SPT6YGR116W SPT6P23615 1451 aaKnown RBP5.09□□□□□ -1.6
SPT6YGR116W HSL1P34244 1518 aa5.08□□□□□ -1.6
SPT6YGR116W TY1B-DR4Q07793 1604 aa5.06□□□□□ -1.6
SPT6YGR116W ENP1P38333 483 aaKnown RBP5.04□□□□□ -1.6
SPT6YGR116W UFD4P33202 1483 aa5.04□□□□□ -1.6
SPT6YGR116W THO2P53552 1597 aaKnown RBP5.03□□□□□ -1.6
SPT6YGR116W TAF2P23255 1407 aa5.03□□□□□ -1.6
SPT6YGR116W SPP41P38904 1435 aa5.03□□□□□ -1.6
SPT6YGR116W YTA7P40340 1379 aa5.03□□□□□ -1.6
SPT6YGR116W SAS10Q12136 610 aaPredicted RBP5.02□□□□□ -1.61
SPT6YGR116W IKI3Q06706 1349 aaKnown RBP5.01□□□□□ -1.61
SPT6YGR116W TAF7Q05021 590 aa5.01□□□□□ -1.61
SPT6YGR116W REV3P14284 1504 aa5□□□□□ -1.61
SPT6YGR116W POL5P39985 1022 aaKnown RBP5□□□□□ -1.61
SPT6YGR116W HIR3P47171 1648 aa5□□□□□ -1.61
SPT6YGR116W SIN3P22579 1536 aa4.99□□□□□ -1.61
SPT6YGR116W MYO2P19524 1574 aaKnown RBP4.98□□□□□ -1.61
SPT6YGR116W STU1P38198 1513 aa4.97□□□□□ -1.61
SPT6YGR116W SEC3P33332 1336 aaKnown RBP4.97□□□□□ -1.61
SPT6YGR116W TRM732Q03496 1420 aa4.96□□□□□ -1.61
SPT6YGR116W SSK2P53599 1579 aa4.96□□□□□ -1.62
SPT6YGR116W POL1P13382 1468 aa4.94□□□□□ -1.62
SPT6YGR116W RSE1Q04693 1361 aaKnown RBP4.94□□□□□ -1.62
SPT6YGR116W CAB3P36076 571 aa4.94□□□□□ -1.62
SPT6YGR116W SMC4Q12267 1418 aa4.93□□□□□ -1.62
SPT6YGR116W MYO4P32492 1471 aa4.9□□□□□ -1.63
SPT6YGR116W STH1P32597 1359 aa4.89□□□□□ -1.63
SPT6YGR116W TFA1P36100 482 aa4.89□□□□□ -1.63
SPT6YGR116W ESP1Q03018 1630 aa4.88□□□□□ -1.63
SPT6YGR116W PAN1P32521 1480 aa4.88□□□□□ -1.63
SPT6YGR116W BUD4P47136 1447 aa4.88□□□□□ -1.63
SPT6YGR116W EBP2P36049 427 aaKnown RBP4.87□□□□□ -1.63
SPT6YGR116W SWR1Q05471 1514 aa4.87□□□□□ -1.63
SPT6YGR116W SSM4P40318 1319 aa4.87□□□□□ -1.63
SPT6YGR116W SPT7P35177 1332 aa4.86□□□□□ -1.63
SPT6YGR116W BPT1P14772 1559 aa4.86□□□□□ -1.63
SPT6YGR116W SCC2Q04002 1493 aa4.85□□□□□ -1.63
SPT6YGR116W RTT106P40161 455 aa4.85□□□□□ -1.63
SPT6YGR116W DNA2P38859 1522 aa4.85□□□□□ -1.63
SPT6YGR116W ECM5Q03214 1411 aa4.84□□□□□ -1.63
SPT6YGR116W YOR1P53049 1477 aa4.84□□□□□ -1.63
SPT6YGR116W YPK9Q12697 1472 aa4.84□□□□□ -1.63
SPT6YGR116W NUP170P38181 1502 aa4.84□□□□□ -1.63
SPT6YGR116W MON2P48563 1636 aaPredicted RBP4.84□□□□□ -1.64
SPT6YGR116W IFH1P39520 1085 aa4.83□□□□□ -1.64
SPT6YGR116W RKR1Q04781 1562 aa4.82□□□□□ -1.64
SPT6YGR116W SNQ2P32568 1501 aaKnown RBP4.81□□□□□ -1.64
SPT6YGR116W RQC2Q12532 1038 aaKnown RBP4.81□□□□□ -1.64
SPT6YGR116W MNN4P36044 1178 aa4.8□□□□□ -1.64
SPT6YGR116W PRS1P32895 427 aaKnown RBP4.79□□□□□ -1.64
SPT6YGR116W GEA1P47102 1408 aaPredicted RBP4.79□□□□□ -1.64
SPT6YGR116W TSC11P40061 1430 aa4.78□□□□□ -1.64
SPT6YGR116W TOP2P06786 1428 aaKnown RBP4.76□□□□□ -1.65
SPT6YGR116W EAF7P53911 425 aaKnown RBP4.76□□□□□ -1.65
SPT6YGR116W YPR148CQ06523 435 aa4.75□□□□□ -1.65
SPT6YGR116W NOP7P53261 605 aaKnown RBP4.74□□□□□ -1.65
SPT6YGR116W MLP2P40457 1679 aa4.74□□□□□ -1.65
SPT6YGR116W LEU3P08638 886 aa4.74□□□□□ -1.65
SPT6YGR116W MHP1P43638 1398 aa4.74□□□□□ -1.65
SPT6YGR116W PDR15Q04182 1529 aaKnown RBP4.74□□□□□ -1.65
SPT6YGR116W RPO31P04051 1460 aa4.73□□□□□ -1.65
SPT6YGR116W PDR10P51533 1564 aa4.73□□□□□ -1.65
SPT6YGR116W CLC1P17891 233 aa4.73□□□□□ -1.65
SPT6YGR116W SRB8P25648 1427 aa4.72□□□□□ -1.65
SPT6YGR116W ATG2P53855 1592 aa4.72□□□□□ -1.65
SPT6YGR116W YCF1P39109 1515 aaKnown RBP4.71□□□□□ -1.66
SPT6YGR116W FPR3P38911 411 aaKnown RBP4.71□□□□□ -1.66
SPT6YGR116W NUP159P40477 1460 aa4.71□□□□□ -1.66
SPT6YGR116W KOG1P38873 1557 aa4.7□□□□□ -1.66
SPT6YGR116W PEP1P32319 1579 aa4.7□□□□□ -1.66
SPT6YGR116W SCT1P32784 759 aa4.69□□□□□ -1.66
SPT6YGR116W RPC31P17890 251 aa4.69□□□□□ -1.66
SPT6YGR116W YLR419WQ06698 1435 aaKnown RBP4.69□□□□□ -1.66
SPT6YGR116W PSD2P53037 1138 aaKnown RBP4.69□□□□□ -1.66
SPT6YGR116W VPS15P22219 1454 aa4.68□□□□□ -1.66
SPT6YGR116W PAF1P38351 445 aa4.68□□□□□ -1.66
SPT6YGR116W TCB2P48231 1178 aa4.68□□□□□ -1.66
SPT6YGR116W YFR016CP43597 1233 aaKnown RBP4.67□□□□□ -1.66
SPT6YGR116W IME2P32581 645 aa4.65□□□□□ -1.66
SPT6YGR116W DNF1P32660 1571 aa4.65□□□□□ -1.66
SPT6YGR116W CAT8P39113 1433 aa4.65□□□□□ -1.66
SPT6YGR116W QCR6P00127 147 aa4.65□□□□□ -1.66
SPT6YGR116W ULS1Q08562 1619 aa4.64□□□□□ -1.67
SPT6YGR116W ESC1Q03661 1658 aaKnown RBP4.63□□□□□ -1.67
SPT6YGR116W RPP0P05317 312 aaKnown RBP4.63□□□□□ -1.67
SPT6YGR116W CDC45Q08032 650 aa4.63□□□□□ -1.67
SPT6YGR116W CFT1Q06632 1357 aaKnown RBP4.63□□□□□ -1.67
Retrieved 100 of 5,963 RNA–protein pairs in 7.4 ms