RNA–Protein interactions for RNA: ENST00000620882.4

LRRC39-204, Transcript of leucine rich repeat containing 39, humanhuman

TSL 5 BASIC

Gene LRRC39, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC39-204ENST00000620882 CHIC1Q5VXU3 224 aa14.3□□□□□ -0.12
LRRC39-204ENST00000620882 AEBP2Q6ZN18 517 aaPredicted RBP14.26□□□□□ -0.13
LRRC39-204ENST00000620882 POTEDQ86YR6 584 aa13.37□□□□□ -0.27
LRRC39-204ENST00000620882 PHF23Q9BUL5 403 aaPredicted RBP12.78□□□□□ -0.36
LRRC39-204ENST00000620882 SENP3Q9H4L4 574 aaPredicted RBP12.1□□□□□ -0.47
LRRC39-204ENST00000620882 PLPPR3Q6T4P5 718 aa11.79□□□□□ -0.52
LRRC39-204ENST00000620882 FOXD1Q16676 465 aa11.41□□□□□ -0.58
LRRC39-204ENST00000620882 MSH5O43196 834 aa11.27□□□□□ -0.61
LRRC39-204ENST00000620882 ADRA2BP18089 450 aa11.26□□□□□ -0.61
LRRC39-204ENST00000620882 PPP6R1Q9UPN7 881 aa11.13□□□□□ -0.63
LRRC39-204ENST00000620882 KCNA4P22459 653 aa11.01□□□□□ -0.65
LRRC39-204ENST00000620882 EHMT2Q96KQ7 1210 aa10.94□□□□□ -0.66
LRRC39-204ENST00000620882 CSRNP3Q8WYN3 585 aa10.54□□□□□ -0.72
LRRC39-204ENST00000620882 PPP4R3CPQ6ZMV5 832 aa10.52□□□□□ -0.72
LRRC39-204ENST00000620882 CACNB1Q02641 598 aaPredicted RBP10.52□□□□□ -0.73
LRRC39-204ENST00000620882 SLC4A1APQ9BWU0 796 aaKnown RBP10.48□□□□□ -0.73
LRRC39-204ENST00000620882 PIAS4Q8N2W9 510 aaPredicted RBP10.47□□□□□ -0.73
LRRC39-204ENST00000620882 NPM3O75607 178 aaKnown RBP10.31□□□□□ -0.76
LRRC39-204ENST00000620882 NCBP3Q53F19 620 aaKnown RBP10.25□□□□□ -0.77
LRRC39-204ENST00000620882 ZBTB22O15209 634 aa10.23□□□□□ -0.77
LRRC39-204ENST00000620882 POTEHQ6S545 545 aa10.2□□□□□ -0.78
LRRC39-204ENST00000620882 CNKSR2Q8WXI2 1034 aa10.04□□□□□ -0.8
LRRC39-204ENST00000620882 MAPK8IP2Q13387 824 aaPredicted RBP9.95□□□□□ -0.82
LRRC39-204ENST00000620882 SCAF1Q9H7N4 1312 aaKnown RBP9.87□□□□□ -0.83
LRRC39-204ENST00000620882 FOXD4L1Q9NU39 408 aa9.84□□□□□ -0.83
LRRC39-204ENST00000620882 DNAJC5BQ9UF47 199 aa9.77□□□□□ -0.85
LRRC39-204ENST00000620882 RNF216Q9NWF9 866 aaPredicted RBP9.72□□□□□ -0.85
LRRC39-204ENST00000620882 RTN4Q9NQC3 1192 aaKnown RBP9.67□□□□□ -0.86
LRRC39-204ENST00000620882 SLC4A2P04920 1241 aa9.64□□□□□ -0.87
LRRC39-204ENST00000620882 HOXD11P31277 338 aaPredicted RBP9.55□□□□□ -0.88
LRRC39-204ENST00000620882 DMRT2Q9Y5R5 561 aa9.54□□□□□ -0.88
LRRC39-204ENST00000620882 SLC24A1O60721 1099 aa9.53□□□□□ -0.88
LRRC39-204ENST00000620882 RNF39Q9H2S5 420 aa9.46□□□□□ -0.89
LRRC39-204ENST00000620882 AMER1Q5JTC6 1135 aaPredicted RBP9.46□□□□□ -0.9
LRRC39-204ENST00000620882 FKBP8Q14318 412 aa9.44□□□□□ -0.9
LRRC39-204ENST00000620882 MYCNP04198 464 aaPredicted RBP9.39□□□□□ -0.91
LRRC39-204ENST00000620882 ATXN8OSP0DMR3 200 aa9.35□□□□□ -0.91
LRRC39-204ENST00000620882 ATF5Q9Y2D1 282 aaPredicted RBP9.33□□□□□ -0.92
LRRC39-204ENST00000620882 C1QBPQ07021 282 aaKnown RBP9.26□□□□□ -0.93
LRRC39-204ENST00000620882 DCAF8L1A6NGE4 600 aa9.13□□□□□ -0.95
LRRC39-204ENST00000620882 U3KPZ7 1027 aaPredicted RBP9.1□□□□□ -0.95
LRRC39-204ENST00000620882 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.08□□□□□ -0.96
LRRC39-204ENST00000620882 PLSCR2Q9NRY7 297 aa8.99□□□□□ -0.97
LRRC39-204ENST00000620882 SAMD1Q6SPF0 538 aaPredicted RBP8.99□□□□□ -0.97
LRRC39-204ENST00000620882 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.93□□□□□ -0.98
LRRC39-204ENST00000620882 HNRNPUL2Q1KMD3 747 aaKnown RBP8.93□□□□□ -0.98
LRRC39-204ENST00000620882 ZNF219Q9P2Y4 722 aaPredicted RBP8.93□□□□□ -0.98
LRRC39-204ENST00000620882 MKRN4PQ13434 485 aaPredicted RBP8.9□□□□□ -0.98
LRRC39-204ENST00000620882 SP7Q8TDD2 431 aaPredicted RBP8.9□□□□□ -0.98
LRRC39-204ENST00000620882 SPDYE4A6NLX3 237 aa8.86□□□□□ -0.99
LRRC39-204ENST00000620882 PROM2Q8N271 834 aa8.81□□□□□ -1
LRRC39-204ENST00000620882 PLCB2Q00722 1185 aa8.8□□□□□ -1
LRRC39-204ENST00000620882 VASPP50552 380 aaPredicted RBP8.78□□□□□ -1
LRRC39-204ENST00000620882 IFNLR1Q8IU57 520 aaPredicted RBP8.78□□□□□ -1
LRRC39-204ENST00000620882 FBXO3Q9UK99 471 aa8.77□□□□□ -1.01
LRRC39-204ENST00000620882 SPINK5Q9NQ38 1064 aaPredicted RBP8.74□□□□□ -1.01
LRRC39-204ENST00000620882 PKD2Q13563 968 aa8.71□□□□□ -1.02
LRRC39-204ENST00000620882 TRHP20396 242 aaPredicted RBP8.68□□□□□ -1.02
LRRC39-204ENST00000620882 POLA2Q14181 598 aa8.68□□□□□ -1.02
LRRC39-204ENST00000620882 DCAF8L2P0C7V8 631 aa8.67□□□□□ -1.02
LRRC39-204ENST00000620882 HAP1P54257 671 aaPredicted RBP8.67□□□□□ -1.02
LRRC39-204ENST00000620882 APLP2Q06481 763 aa8.63□□□□□ -1.03
LRRC39-204ENST00000620882 PRKCSHP14314 528 aaPredicted RBP8.62□□□□□ -1.03
LRRC39-204ENST00000620882 FBLN2P98095 1184 aa8.62□□□□□ -1.03
LRRC39-204ENST00000620882 CAPN15O75808 1086 aa8.55□□□□□ -1.04
LRRC39-204ENST00000620882 NPM1P06748 294 aaKnown RBP eCLIP8.55□□□□□ -1.04
LRRC39-204ENST00000620882 ABCB7O75027 752 aa8.53□□□□□ -1.04
LRRC39-204ENST00000620882 KDM2AQ9Y2K7 1162 aa8.53□□□□□ -1.04
LRRC39-204ENST00000620882 BCANQ96GW7 911 aa8.49□□□□□ -1.05
LRRC39-204ENST00000620882 TAOK2Q9UL54 1235 aa8.48□□□□□ -1.05
LRRC39-204ENST00000620882 VSIG10Q8N0Z9 540 aa8.46□□□□□ -1.05
LRRC39-204ENST00000620882 RGL2O15211 777 aa8.46□□□□□ -1.06
LRRC39-204ENST00000620882 ECM2O94769 699 aaPredicted RBP8.45□□□□□ -1.06
LRRC39-204ENST00000620882 KLHL34Q8N239 644 aa8.44□□□□□ -1.06
LRRC39-204ENST00000620882 SPOCK2Q92563 424 aa8.44□□□□□ -1.06
LRRC39-204ENST00000620882 PAXIP1Q6ZW49 1069 aaPredicted RBP8.43□□□□□ -1.06
LRRC39-204ENST00000620882 CHRDL2Q6WN34 429 aa8.42□□□□□ -1.06
LRRC39-204ENST00000620882 CFAP44Q96MT7 982 aa8.42□□□□□ -1.06
LRRC39-204ENST00000620882 BBXQ8WY36 941 aaPredicted RBP8.41□□□□□ -1.06
LRRC39-204ENST00000620882 OSCARQ8IYS5 282 aa8.41□□□□□ -1.06
LRRC39-204ENST00000620882 DSG3P32926 999 aa8.38□□□□□ -1.07
LRRC39-204ENST00000620882 ZNF692Q9BU19 519 aaPredicted RBP8.38□□□□□ -1.07
LRRC39-204ENST00000620882 TSHZ2Q9NRE2 1034 aa8.37□□□□□ -1.07
LRRC39-204ENST00000620882 TPRNQ4KMQ1 711 aa8.37□□□□□ -1.07
LRRC39-204ENST00000620882 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.37□□□□□ -1.07
LRRC39-204ENST00000620882 ZBTB12Q9Y330 459 aaPredicted RBP8.37□□□□□ -1.07
LRRC39-204ENST00000620882 PLCD3Q8N3E9 789 aa8.35□□□□□ -1.07
LRRC39-204ENST00000620882 SSUH2Q9Y2M2 353 aa8.35□□□□□ -1.07
LRRC39-204ENST00000620882 LHX8Q68G74 356 aa8.33□□□□□ -1.08
LRRC39-204ENST00000620882 PABPN1Q86U42 306 aaKnown RBP eCLIP8.33□□□□□ -1.08
LRRC39-204ENST00000620882 MIER1Q8N108 512 aa8.31□□□□□ -1.08
LRRC39-204ENST00000620882 STAG3Q9UJ98 1225 aa8.3□□□□□ -1.08
LRRC39-204ENST00000620882 CHGAP10645 457 aaKnown RBP8.29□□□□□ -1.08
LRRC39-204ENST00000620882 SPRYD3Q8NCJ5 442 aa8.28□□□□□ -1.08
LRRC39-204ENST00000620882 SPDYE2BA6NHP3 402 aa8.28□□□□□ -1.08
LRRC39-204ENST00000620882 SPDYE6P0CI01 402 aa8.28□□□□□ -1.08
LRRC39-204ENST00000620882 SPDYE2Q495Y8 402 aa8.28□□□□□ -1.08
LRRC39-204ENST00000620882 CIZ1Q9ULV3 898 aaPredicted RBP8.26□□□□□ -1.09
LRRC39-204ENST00000620882 RNF25Q96BH1 459 aaPredicted RBP8.25□□□□□ -1.09
LRRC39-204ENST00000620882 DNAJC5Q9H3Z4 198 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms