RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 AEBP2Q6ZN18 517 aaPredicted RBP21.08■□□□□ 0.97
SCFD1-208ENST00000553278 CHIC1Q5VXU3 224 aa20.27■□□□□ 0.84
SCFD1-208ENST00000553278 SENP3Q9H4L4 574 aaPredicted RBP18.1■□□□□ 0.49
SCFD1-208ENST00000553278 PHF23Q9BUL5 403 aaPredicted RBP17.87■□□□□ 0.45
SCFD1-208ENST00000553278 FOXD1Q16676 465 aa16.96■□□□□ 0.31
SCFD1-208ENST00000553278 PLPPR3Q6T4P5 718 aa16.89■□□□□ 0.29
SCFD1-208ENST00000553278 POTEDQ86YR6 584 aa16.88■□□□□ 0.29
SCFD1-208ENST00000553278 MSH5O43196 834 aa16.13■□□□□ 0.17
SCFD1-208ENST00000553278 ADRA2BP18089 450 aa15.71■□□□□ 0.11
SCFD1-208ENST00000553278 PIAS4Q8N2W9 510 aaPredicted RBP15.68■□□□□ 0.1
SCFD1-208ENST00000553278 EHMT2Q96KQ7 1210 aa15.61■□□□□ 0.09
SCFD1-208ENST00000553278 KCNA4P22459 653 aa15.59■□□□□ 0.09
SCFD1-208ENST00000553278 PPP6R1Q9UPN7 881 aa15.53■□□□□ 0.08
SCFD1-208ENST00000553278 SLC4A1APQ9BWU0 796 aaKnown RBP15.05■□□□□ -0
SCFD1-208ENST00000553278 CSRNP3Q8WYN3 585 aa15□□□□□ -0.01
SCFD1-208ENST00000553278 PPP4R3CPQ6ZMV5 832 aa14.97□□□□□ -0.01
SCFD1-208ENST00000553278 NCBP3Q53F19 620 aaKnown RBP14.89□□□□□ -0.03
SCFD1-208ENST00000553278 NPM3O75607 178 aaKnown RBP14.59□□□□□ -0.07
SCFD1-208ENST00000553278 CNKSR2Q8WXI2 1034 aa14.38□□□□□ -0.11
SCFD1-208ENST00000553278 ZBTB22O15209 634 aa14.33□□□□□ -0.12
SCFD1-208ENST00000553278 SCAF1Q9H7N4 1312 aaKnown RBP14.31□□□□□ -0.12
SCFD1-208ENST00000553278 CACNB1Q02641 598 aaPredicted RBP14.25□□□□□ -0.13
SCFD1-208ENST00000553278 DMRT2Q9Y5R5 561 aa14.25□□□□□ -0.13
SCFD1-208ENST00000553278 MAPK8IP2Q13387 824 aaPredicted RBP14.21□□□□□ -0.13
SCFD1-208ENST00000553278 FOXD4L1Q9NU39 408 aa14.14□□□□□ -0.15
SCFD1-208ENST00000553278 DNAJC5BQ9UF47 199 aa14.05□□□□□ -0.16
SCFD1-208ENST00000553278 SLC24A1O60721 1099 aa13.98□□□□□ -0.17
SCFD1-208ENST00000553278 AMER1Q5JTC6 1135 aaPredicted RBP13.91□□□□□ -0.18
SCFD1-208ENST00000553278 RNF216Q9NWF9 866 aaPredicted RBP13.87□□□□□ -0.19
SCFD1-208ENST00000553278 RTN4Q9NQC3 1192 aaKnown RBP13.85□□□□□ -0.19
SCFD1-208ENST00000553278 DCAF8L1A6NGE4 600 aa13.71□□□□□ -0.21
SCFD1-208ENST00000553278 RNF39Q9H2S5 420 aa13.69□□□□□ -0.22
SCFD1-208ENST00000553278 ATXN8OSP0DMR3 200 aa13.58□□□□□ -0.24
SCFD1-208ENST00000553278 HOXD11P31277 338 aaPredicted RBP13.56□□□□□ -0.24
SCFD1-208ENST00000553278 SLC4A2P04920 1241 aa13.55□□□□□ -0.24
SCFD1-208ENST00000553278 FKBP8Q14318 412 aa13.54□□□□□ -0.24
SCFD1-208ENST00000553278 MYCNP04198 464 aaPredicted RBP13.5□□□□□ -0.25
SCFD1-208ENST00000553278 C1QBPQ07021 282 aaKnown RBP13.46□□□□□ -0.25
SCFD1-208ENST00000553278 POTEHQ6S545 545 aa13.1□□□□□ -0.31
SCFD1-208ENST00000553278 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.03□□□□□ -0.32
SCFD1-208ENST00000553278 HNRNPUL2Q1KMD3 747 aaKnown RBP13.03□□□□□ -0.32
SCFD1-208ENST00000553278 ATF5Q9Y2D1 282 aaPredicted RBP13.01□□□□□ -0.33
SCFD1-208ENST00000553278 SAMD1Q6SPF0 538 aaPredicted RBP13□□□□□ -0.33
SCFD1-208ENST00000553278 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.97□□□□□ -0.337e-7■□□□□ 9.1
SCFD1-208ENST00000553278 FBXO3Q9UK99 471 aa12.87□□□□□ -0.35
SCFD1-208ENST00000553278 U3KPZ7 1027 aaPredicted RBP12.81□□□□□ -0.36
SCFD1-208ENST00000553278 PLCB2Q00722 1185 aa12.77□□□□□ -0.37
SCFD1-208ENST00000553278 ZNF219Q9P2Y4 722 aaPredicted RBP12.75□□□□□ -0.37
SCFD1-208ENST00000553278 APLP2Q06481 763 aa12.71□□□□□ -0.37
SCFD1-208ENST00000553278 SPDYE4A6NLX3 237 aa12.7□□□□□ -0.38
SCFD1-208ENST00000553278 VASPP50552 380 aaPredicted RBP12.62□□□□□ -0.39
SCFD1-208ENST00000553278 HAP1P54257 671 aaPredicted RBP12.62□□□□□ -0.39
SCFD1-208ENST00000553278 DCAF8L2P0C7V8 631 aa12.6□□□□□ -0.39
SCFD1-208ENST00000553278 DSG3P32926 999 aa12.6□□□□□ -0.39
SCFD1-208ENST00000553278 PROM2Q8N271 834 aa12.57□□□□□ -0.4
SCFD1-208ENST00000553278 BCANQ96GW7 911 aa12.53□□□□□ -0.4
SCFD1-208ENST00000553278 CAPN15O75808 1086 aa12.52□□□□□ -0.41
SCFD1-208ENST00000553278 FBLN2P98095 1184 aa12.51□□□□□ -0.41
SCFD1-208ENST00000553278 SPINK5Q9NQ38 1064 aaPredicted RBP12.5□□□□□ -0.41
SCFD1-208ENST00000553278 MKRN4PQ13434 485 aaPredicted RBP12.49□□□□□ -0.41
SCFD1-208ENST00000553278 IFNLR1Q8IU57 520 aaPredicted RBP12.48□□□□□ -0.41
SCFD1-208ENST00000553278 VSIG10Q8N0Z9 540 aa12.45□□□□□ -0.42
SCFD1-208ENST00000553278 PKD2Q13563 968 aa12.4□□□□□ -0.42
SCFD1-208ENST00000553278 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.34□□□□□ -0.43
SCFD1-208ENST00000553278 TAOK2Q9UL54 1235 aa12.34□□□□□ -0.43
SCFD1-208ENST00000553278 PRKCSHP14314 528 aaPredicted RBP12.31□□□□□ -0.44
SCFD1-208ENST00000553278 TRHP20396 242 aaPredicted RBP12.29□□□□□ -0.44
SCFD1-208ENST00000553278 BBXQ8WY36 941 aaPredicted RBP12.29□□□□□ -0.44
SCFD1-208ENST00000553278 POLA2Q14181 598 aa12.28□□□□□ -0.44
SCFD1-208ENST00000553278 SPOCK2Q92563 424 aa12.25□□□□□ -0.45
SCFD1-208ENST00000553278 KLHL34Q8N239 644 aa12.24□□□□□ -0.45
SCFD1-208ENST00000553278 ECM2O94769 699 aaPredicted RBP12.22□□□□□ -0.45
SCFD1-208ENST00000553278 PAXIP1Q6ZW49 1069 aaPredicted RBP12.2□□□□□ -0.46
SCFD1-208ENST00000553278 ZBTB12Q9Y330 459 aaPredicted RBP12.2□□□□□ -0.46
SCFD1-208ENST00000553278 ABCB7O75027 752 aa12.17□□□□□ -0.46
SCFD1-208ENST00000553278 KDM2AQ9Y2K7 1162 aa12.17□□□□□ -0.46
SCFD1-208ENST00000553278 CFAP44Q96MT7 982 aa12.16□□□□□ -0.46
SCFD1-208ENST00000553278 TPRNQ4KMQ1 711 aa12.15□□□□□ -0.46
SCFD1-208ENST00000553278 NPM1P06748 294 aaKnown RBP eCLIP12.12□□□□□ -0.47
SCFD1-208ENST00000553278 STAG3Q9UJ98 1225 aa12.12□□□□□ -0.47
SCFD1-208ENST00000553278 SPRYD3Q8NCJ5 442 aa12.08□□□□□ -0.48
SCFD1-208ENST00000553278 PLCD3Q8N3E9 789 aa12.06□□□□□ -0.48
SCFD1-208ENST00000553278 RBM42Q9BTD8 480 aaKnown RBP12.05□□□□□ -0.48
SCFD1-208ENST00000553278 CHRDL2Q6WN34 429 aa12.04□□□□□ -0.48
SCFD1-208ENST00000553278 RGL2O15211 777 aa12.03□□□□□ -0.48
SCFD1-208ENST00000553278 ZNF692Q9BU19 519 aaPredicted RBP12□□□□□ -0.49
SCFD1-208ENST00000553278 TSHZ2Q9NRE2 1034 aa11.99□□□□□ -0.49
SCFD1-208ENST00000553278 SP7Q8TDD2 431 aaPredicted RBP11.97□□□□□ -0.49
SCFD1-208ENST00000553278 MIER1Q8N108 512 aa11.96□□□□□ -0.49
SCFD1-208ENST00000553278 CHGAP10645 457 aaKnown RBP11.93□□□□□ -0.5
SCFD1-208ENST00000553278 SPDYE2BA6NHP3 402 aa11.91□□□□□ -0.5
SCFD1-208ENST00000553278 SPDYE6P0CI01 402 aa11.91□□□□□ -0.5
SCFD1-208ENST00000553278 SPDYE2Q495Y8 402 aa11.91□□□□□ -0.5
SCFD1-208ENST00000553278 CIZ1Q9ULV3 898 aaPredicted RBP11.91□□□□□ -0.5
SCFD1-208ENST00000553278 PLEKHG5O94827 1062 aa11.9□□□□□ -0.5
SCFD1-208ENST00000553278 NBR1Q14596 966 aa11.89□□□□□ -0.51
SCFD1-208ENST00000553278 ZBTB47Q9UFB7 747 aaPredicted RBP11.89□□□□□ -0.51
SCFD1-208ENST00000553278 SSUH2Q9Y2M2 353 aa11.88□□□□□ -0.51
SCFD1-208ENST00000553278 TRIM41Q8WV44 630 aa11.86□□□□□ -0.51
SCFD1-208ENST00000553278 PABPN1Q86U42 306 aaKnown RBP eCLIP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms