RNA–Protein interactions for RNA: YOR048C

RAT1, Transcript of Nuclear 5' to 3' single-stranded RNA exonuclease, yeastyeast

Gene RAT1, Length 3,021 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RAT1YOR048C MCM16Q12262 181 aa6.04□□□□□ -1.44
RAT1YOR048C DEP1P31385 405 aa6.04□□□□□ -1.44
RAT1YOR048C RPN10P38886 268 aaKnown RBP6.04□□□□□ -1.44
RAT1YOR048C YPT11P48559 417 aa6.04□□□□□ -1.44
RAT1YOR048C DCS2Q12123 353 aa6.04□□□□□ -1.44
RAT1YOR048C ARP8Q12386 881 aaKnown RBP RIP-Chip data6.04□□□□□ -1.44 RIP-Chip
RAT1YOR048C STO1P34160 861 aaKnown RBP6.03□□□□□ -1.44
RAT1YOR048C CEP3P40969 608 aa6.03□□□□□ -1.44
RAT1YOR048C YMR196WQ04336 1088 aa6.03□□□□□ -1.44
RAT1YOR048C COG4Q06096 861 aa6.03□□□□□ -1.44
RAT1YOR048C NGR1P32831 672 aaKnown RBP6.03□□□□□ -1.44
RAT1YOR048C HAL5P38970 855 aaKnown RBP6.03□□□□□ -1.44
RAT1YOR048C CIN4P39110 191 aa6.03□□□□□ -1.44
RAT1YOR048C SPO22P40511 975 aa6.03□□□□□ -1.44
RAT1YOR048C YMR102CQ03177 834 aa6.03□□□□□ -1.44
RAT1YOR048C RPC25P35718 212 aa6.02□□□□□ -1.45
RAT1YOR048C APT1P49435 187 aaKnown RBP6.02□□□□□ -1.45
RAT1YOR048C RBA50Q04418 439 aa6.02□□□□□ -1.45
RAT1YOR048C URA1P28272 314 aaPredicted RBP6.01□□□□□ -1.45
RAT1YOR048C PSO2P30620 661 aa6.01□□□□□ -1.45
RAT1YOR048C RER2P35196 286 aa6.01□□□□□ -1.45
RAT1YOR048C GRX7P38068 203 aa6.01□□□□□ -1.45
RAT1YOR048C CAF130P53280 1122 aaPredicted RBP6.01□□□□□ -1.45
RAT1YOR048C GIS4Q04233 774 aa6.01□□□□□ -1.45
RAT1YOR048C CSC1Q06538 782 aa6.01□□□□□ -1.45
RAT1YOR048C PPM2Q08282 695 aa6.01□□□□□ -1.45
RAT1YOR048C PFK2P16862 959 aaKnown RBP RIP-Chip data6.01□□□□□ -1.45not detected
RAT1YOR048C COQ1P18900 473 aa6.01□□□□□ -1.45
RAT1YOR048C PRP40P33203 583 aaKnown RBP6.01□□□□□ -1.45
RAT1YOR048C YET1P35723 206 aa6.01□□□□□ -1.45
RAT1YOR048C YHL017WP38745 532 aa6.01□□□□□ -1.45
RAT1YOR048C TCD1P38756 429 aa6.01□□□□□ -1.45
RAT1YOR048C SET1P38827 1080 aaKnown RBP6.01□□□□□ -1.45
RAT1YOR048C YJR008WP47085 338 aa6.01□□□□□ -1.45
RAT1YOR048C YLR271WQ06152 274 aa6.01□□□□□ -1.45
RAT1YOR048C SFH1Q06168 426 aa6.01□□□□□ -1.45
RAT1YOR048C DIT2P21595 489 aa6.01□□□□□ -1.45
RAT1YOR048C PTP3P40048 928 aa6.01□□□□□ -1.45
RAT1YOR048C VPS60Q03390 229 aa6.01□□□□□ -1.45
RAT1YOR048C ENV9Q08651 330 aa6.01□□□□□ -1.45
RAT1YOR048C UBC1P21734 215 aaKnown RBP6□□□□□ -1.45
RAT1YOR048C ECM32P32644 1121 aaKnown RBP6□□□□□ -1.45
RAT1YOR048C ECM1P39715 212 aa6□□□□□ -1.45
RAT1YOR048C LYS14P40971 790 aa6□□□□□ -1.45
RAT1YOR048C ECM23Q02710 187 aa6□□□□□ -1.45
RAT1YOR048C INM2Q05533 292 aa6□□□□□ -1.45
RAT1YOR048C ATG9Q12142 997 aa6□□□□□ -1.45
RAT1YOR048C SLD2P34252 453 aa6□□□□□ -1.45
RAT1YOR048C RGD1P38339 666 aa6□□□□□ -1.45
RAT1YOR048C VPS41P38959 992 aa6□□□□□ -1.45
RAT1YOR048C HGH1P48362 394 aaKnown RBP6□□□□□ -1.45
RAT1YOR048C EST2Q06163 884 aa6□□□□□ -1.45
RAT1YOR048C TPM1P17536 199 aaKnown RBP5.99□□□□□ -1.45
RAT1YOR048C ACE2P21192 770 aa5.99□□□□□ -1.45
RAT1YOR048C ATG36P46983 293 aa5.99□□□□□ -1.45
RAT1YOR048C VPS75P53853 264 aa5.99□□□□□ -1.45
RAT1YOR048C UBP10P53874 792 aaPredicted RBP5.99□□□□□ -1.45
RAT1YOR048C SDH5Q08230 162 aa5.99□□□□□ -1.45
RAT1YOR048C ETT1Q08421 412 aaKnown RBP5.99□□□□□ -1.45
RAT1YOR048C SSP2Q08646 371 aa5.99□□□□□ -1.45
RAT1YOR048C CWC2Q12046 339 aaPredicted RBP5.99□□□□□ -1.45
RAT1YOR048C RSF2P46974 1380 aa5.99□□□□□ -1.45
RAT1YOR048C SWI4P25302 1093 aaKnown RBP5.99□□□□□ -1.45
RAT1YOR048C MED8P38304 223 aa5.99□□□□□ -1.45
RAT1YOR048C HOT1Q03213 719 aa5.99□□□□□ -1.45
RAT1YOR048C SML1Q04964 104 aa5.99□□□□□ -1.45
RAT1YOR048C THI3Q07471 609 aa5.99□□□□□ -1.45
RAT1YOR048C PSK2Q08217 1101 aa5.99□□□□□ -1.45
RAT1YOR048C TAF13P11747 167 aa5.99□□□□□ -1.45
RAT1YOR048C STI1P15705 589 aaKnown RBP RIP-Chip data5.99□□□□□ -1.45not detected
RAT1YOR048C PAP1P29468 568 aaKnown RBP5.99□□□□□ -1.45
RAT1YOR048C ATG3P40344 310 aa5.99□□□□□ -1.45
RAT1YOR048C CSM2P40465 213 aa5.99□□□□□ -1.45
RAT1YOR048C SMC3P47037 1230 aa5.99□□□□□ -1.45
RAT1YOR048C YGR237CP50089 785 aa5.99□□□□□ -1.45
RAT1YOR048C PTC5Q12511 572 aa5.99□□□□□ -1.45
RAT1YOR048C CDC37P06101 506 aaKnown RBP5.98□□□□□ -1.45
RAT1YOR048C RIM101P33400 625 aa5.98□□□□□ -1.45
RAT1YOR048C RRP6Q12149 733 aaKnown RBP5.98□□□□□ -1.45
RAT1YOR048C TOM1Q03280 3268 aa5.98□□□□□ -1.45
RAT1YOR048C DOT5P40553 215 aa5.98□□□□□ -1.45
RAT1YOR048C UME1Q03010 460 aa5.98□□□□□ -1.45
RAT1YOR048C YOR111WQ99210 232 aa5.98□□□□□ -1.45
RAT1YOR048C SMF1P38925 575 aa5.97□□□□□ -1.45
RAT1YOR048C UFD2P54860 961 aa5.97□□□□□ -1.45
RAT1YOR048C TFC6Q06339 672 aa5.97□□□□□ -1.45
RAT1YOR048C QCR6P00127 147 aa5.97□□□□□ -1.45
RAT1YOR048C SPO12P17123 173 aa5.97□□□□□ -1.45
RAT1YOR048C YKT6P36015 200 aaKnown RBP5.97□□□□□ -1.45
RAT1YOR048C MET1P36150 593 aa5.97□□□□□ -1.45
RAT1YOR048C PTC4P38089 393 aa5.97□□□□□ -1.45
RAT1YOR048C FOX2Q02207 900 aaKnown RBP5.97□□□□□ -1.45
RAT1YOR048C PRO3P32263 286 aaKnown RBP5.96□□□□□ -1.45
RAT1YOR048C RRP8P38961 392 aaKnown RBP5.96□□□□□ -1.45
RAT1YOR048C CAJ1P39101 391 aa5.96□□□□□ -1.45
RAT1YOR048C YNL035CP53962 389 aaKnown RBP5.96□□□□□ -1.45
RAT1YOR048C HCR1Q05775 265 aaKnown RBP5.96□□□□□ -1.45
RAT1YOR048C YRF1-3P0CX14 1859 aa5.96□□□□□ -1.46
RAT1YOR048C YRF1-7P0CX15 1859 aa5.96□□□□□ -1.46
RAT1YOR048C YRF1-6P53819 1859 aa5.96□□□□□ -1.46
Retrieved 100 of 5,963 RNA–protein pairs in 67.7 ms